View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_high_16 (Length: 420)
Name: NF14229_high_16
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 20 - 412
Target Start/End: Complemental strand, 49698838 - 49698446
Alignment:
| Q |
20 |
agatggttcttcgacggagtttggttcttttggctccgaaatcgcctagaggcggaagtggagctccgccggtgaggctgtacatgctgccatcatcgtg |
119 |
Q |
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| T |
49698838 |
agatggttcttcgacggagtttggttcttttggctccgaaatcgcctagaggcggaagtggagctccgccagtgaggctgtacatgctgccatcatcgtg |
49698739 |
T |
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| Q |
120 |
ttccgggagaattccatctccattatgattttccatcatgttcatatttctctcatgatctaaggcatcatcatcgttgtggctttcatacatcattttt |
219 |
Q |
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| T |
49698738 |
ttccgggagaattccatctccattatgattttccatcatgttcatatttctctcatgatctaaggcatcatcatcgttgtggctttcatacatcattttt |
49698639 |
T |
|
| Q |
220 |
gcacaccgtagagattagtaacaatgtttcaatgaaatttcttaatgtcacgattgtacgtctacggtttttatgaagctagctaactttgttcaatcat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49698638 |
gcacaccgtagagattagtaacaatgtttcaatgaaatttcttaatgtcacgattgtacgtctacggtttttatgaagctagctaactttgttcaatcat |
49698539 |
T |
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| Q |
320 |
tatatgattaatcaccatgcaacactagcttctttattaattctctggagatggaatttgtgtggtattgtatggtgttaattgcttcatctc |
412 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49698538 |
tatatgattaatcaccatgcaacaccagcttctttattaattctctggagatggaatttgtgtggtattgtatggtgttaattgcttcttctc |
49698446 |
T |
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