View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14229_high_19 (Length: 396)
Name: NF14229_high_19
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_high_19 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr8 (6 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 396
Target Start/End: Complemental strand, 29198311 - 29197927
Alignment:
| Q |
12 |
atgaaatagtaccatagtattggtatgactccaaaaaaggaggttaagagatttatgactttaggtatacatcacaatagtatatatgtgcattaaaatt |
111 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29198311 |
atgaaatagtaccacagtattggtatgactccaaaaaaggaggttaagagatttatgactttaggtatacatcacaatagtatatatgtgcattaaagtt |
29198212 |
T |
|
| Q |
112 |
tgcttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataacgctagggtaattccaccaaacaggaatacc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29198211 |
tgcttcatcaatctttgacaagcatacagaaaaattaaataatgtaaaaaaatacaaatccttaaataacgctagggtaattccaccaaacaggaatacc |
29198112 |
T |
|
| Q |
212 |
aataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactctttttatctgccgttgttttatttttcaccacggta |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29198111 |
aataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactctttttatctgccgttgttttatttttcaccacggta |
29198012 |
T |
|
| Q |
312 |
accgatcttttctccggcataaccaccctcacaccaaaatgaataactccattttgcctcccttcccagttcctcaatttataac |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29198011 |
accgatcttttctccggcataaccaccctcacaccaaaatgaataactccattttgcctcccttcccagttcctcaatttataac |
29197927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 173 - 396
Target Start/End: Complemental strand, 12271428 - 12271205
Alignment:
| Q |
173 |
ttaaataacgctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataa |
272 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12271428 |
ttaaataatgttagggtaattccaccaaacaggaataccaataacagcaccattagagttcttcgtaccaacatcaattccagttaaccggtcaccataa |
12271329 |
T |
|
| Q |
273 |
ctctttttatctgccgttgttttatttttcaccacggtaaccgatcttttctccggcataaccaccctcacaccaaaatgaataactccattttgcctcc |
372 |
Q |
| |
|
|||||| ||| ||| | || || | | |||||||||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12271328 |
ctctttccatccgccaccggttgcttctccgccacggtaaccgttctttgctctggcacaaccaccctcacaccaaaatgaataactccattttgcctcc |
12271229 |
T |
|
| Q |
373 |
cttcccagttcctcaatttataac |
396 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
12271228 |
cttcccaattcctcaatttataac |
12271205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 164 - 396
Target Start/End: Complemental strand, 12288103 - 12287871
Alignment:
| Q |
164 |
tacaaatccttaaataacgctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccga |
263 |
Q |
| |
|
|||||||| ||||| || || ||||||||||||| || |||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12288103 |
tacaaatctttaaacaatgccggggtaattccacctaaaaggaataccaataacacctccattagagttcttggtaccaacatcaattccagttaaccga |
12288004 |
T |
|
| Q |
264 |
tcaccataactctttttatctgccgttgttttatttttcaccacggtaaccgatcttttctccggcataaccaccctcacaccaaaatgaataactccat |
363 |
Q |
| |
|
|||||||||||||| ||| ||| ||||| |||| | |||| ||||||||||||| ||| ||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
12288003 |
tcaccataactcttcccatccgccagtgtttccttttccgccaccgtaaccgatctttcctctggcgcaaccaccttcacaccaaaatgaataactccat |
12287904 |
T |
|
| Q |
364 |
tttgcctcccttcccagttcctcaatttataac |
396 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| |
|
|
| T |
12287903 |
tttgcctcccttcccaatctctcaatttataac |
12287871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 82 - 396
Target Start/End: Complemental strand, 12257512 - 12257201
Alignment:
| Q |
82 |
atcacaatagtatatatgtgcattaaaatttgcttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataac |
181 |
Q |
| |
|
||||||||| ||||| ||||||| |||||| |||||| ||||||||||||| || || |||||| ||||||| | || |||| |||||||| |
|
|
| T |
12257512 |
atcacaataatatat-tgtgcatcaaaattgacttcattaatctttgacaagaatgca-aaaaatcaaataatataaa----tataaatatttaaataat |
12257419 |
T |
|
| Q |
182 |
gctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactcttttta |
281 |
Q |
| |
|
| | |||||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||| | |
|
|
| T |
12257418 |
gtttgggtaattccaccaaaacggaataccaatagcaacaccattagagtccttggtaccaacatccattccagttaaccgaccaccataattctttcca |
12257319 |
T |
|
| Q |
282 |
tctgccgttgttttatttttcacc---acggtaaccgatcttttctccggcataaccaccctcacaccaaaatgaataactccattttgcctcccttccc |
378 |
Q |
| |
|
|| || || | |||| ||| |||||| ||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12257318 |
tccgcgacagtctgcttttcaaccgccacggtagccgatgttttctccggcacaaccaccctcacactgaaatgaataactccattttgcctcccttccc |
12257219 |
T |
|
| Q |
379 |
agttcctcaatttataac |
396 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
12257218 |
agttcctcaatttataac |
12257201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 82 - 396
Target Start/End: Complemental strand, 12264904 - 12264593
Alignment:
| Q |
82 |
atcacaatagtatatatgtgcattaaaatttgcttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataac |
181 |
Q |
| |
|
||||||||| ||||| ||||||| |||||| |||||| ||||||||||||| || || |||||| ||||||| | || |||| |||||||| |
|
|
| T |
12264904 |
atcacaataatatat-tgtgcatcaaaattgacttcattaatctttgacaagaatgca-aaaaatcaaataatataaa----tataaatatttaaataat |
12264811 |
T |
|
| Q |
182 |
gctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactcttttta |
281 |
Q |
| |
|
| | |||||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||| | |
|
|
| T |
12264810 |
gtttgggtaattccaccaaaacggaataccaatagcaacaccattagagtccttggtaccaacatccattccagttaaccgaccaccataattctttcca |
12264711 |
T |
|
| Q |
282 |
tctgccgttgttttatttttcacc---acggtaaccgatcttttctccggcataaccaccctcacaccaaaatgaataactccattttgcctcccttccc |
378 |
Q |
| |
|
|| || || | |||| ||| |||||| ||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12264710 |
tccgcgacagtctgcttttcaaccgccacggtagccgatgttttctccggcacaaccaccctcacactgaaatgaataactccattttgcctcccttccc |
12264611 |
T |
|
| Q |
379 |
agttcctcaatttataac |
396 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
12264610 |
agttcctcaatttataac |
12264593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 118 - 396
Target Start/End: Complemental strand, 12283297 - 12283021
Alignment:
| Q |
118 |
atcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataacgctagggtaattccaccaaacaggaataccaataac |
217 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||||||| |||||||| |||||||| | |||||||||||||||||| |||| ||||||| | |
|
|
| T |
12283297 |
atcaatctttgacaagcatgcaaaaaaattaaataatgtaaaaaa-tacaaatc-ttaaataatgttagggtaattccaccaaaagggaaaaccaatagc |
12283200 |
T |
|
| Q |
218 |
aacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactctttttatctgccgttgttttatttttcaccacggtaaccgat |
317 |
Q |
| |
|
||||| |||| |||||||| ||||||||| |||||||||||||| ||||| || ||||| || | |||| || | | |||||||||| ||| |
|
|
| T |
12283199 |
aacaccattacagttcttgacaccaacatccattccagttaaccggccaccacaattctttccatgcatcaccgtttgcttctccgccacggtaactgat |
12283100 |
T |
|
| Q |
318 |
cttttctccggcataaccaccctcacaccaaaatgaataactccattttgcctcccttcccagttcctcaatttataac |
396 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
12283099 |
ctttcctccggcacaaccaccctcacactgaaatgaataactccattttgcctcccttcccaatccctcaatttataac |
12283021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 115 - 396
Target Start/End: Complemental strand, 12267577 - 12267295
Alignment:
| Q |
115 |
ttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataacgctagggtaattccaccaaacaggaataccaat |
214 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||||||||| |||||||| |||||||| | ||||||||||||| |||| |||| |||||| |
|
|
| T |
12267577 |
ttcatcaatctttaacaagcatgcaaaaaaatgaaataatgtaaaaaa-tacaaatc-ttaaataatgttagggtaattccatcaaaagggaaaaccaat |
12267480 |
T |
|
| Q |
215 |
aacaacactattagagttcttggtaccaaca---tcaattccagttaaccgatcaccataactctttttatctgccgttgttttatttttcaccacggta |
311 |
Q |
| |
|
| |||||| ||||||||||||| ||||||| || |||||||||||||| ||||| || ||||| || | |||| || | | |||||||| |
|
|
| T |
12267479 |
agcaacaccattagagttcttgacaccaacaatatccattccagttaaccggccaccacaattctttccatgcatcaccgtttgcttctccgccacggta |
12267380 |
T |
|
| Q |
312 |
accgatcttttctccggcataaccaccctcacaccaaaatgaataactccattttgcctcccttcccagttcctcaatttataac |
396 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||||||||||| |||||||||||||||||||| | |||||||||||||| |
|
|
| T |
12267379 |
accgatctttcctccggcacaaccaccctcacactaaaatgaataaccccattttgcctcccttcccaatccctcaatttataac |
12267295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University