View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_high_21 (Length: 383)
Name: NF14229_high_21
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 368
Target Start/End: Complemental strand, 42747022 - 42746671
Alignment:
| Q |
12 |
aaaggtttagaatcttgattatgtgatacaaaaactacagccatatggctgttcaagagtgagatcatttgtcaaggattagatatatccgaggtttctg |
111 |
Q |
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| T |
42747022 |
aaaggtttagaatcttgattatgtgatacaaaaacta------tatggctgttcaagagtgagatcatttgttaaggattagatatatccgaggtttctg |
42746929 |
T |
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| Q |
112 |
agatggaatttagtgatacatcccattttgagagtagtgtcatctctatttgtggtgtaattttgtaacgttgatgttctttgacttggctattatcgac |
211 |
Q |
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| T |
42746928 |
agatggaagttagtgatacatcctattttgagagtagcgtcgtctctatttgtggtgtaattttgtaacgttgatgttctttgacttggctattatcgac |
42746829 |
T |
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| Q |
212 |
tttatatacgcgtttgaacttgaaggctcagctgacaggatgtgggtttttatttgcacaaagaatcatctattggttttcaatatctttgtcttgacaa |
311 |
Q |
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| T |
42746828 |
tttatatacgcgtttgaacttgaaggctcagctgaccggatgtgggtttttatttgcacaaagaatcatctattggttttcaatatctttgtcttgacaa |
42746729 |
T |
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| Q |
312 |
g-nnnnnnntaaaattggaattataaaccctactaccgtgaagttcaacccaatatca |
368 |
Q |
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| T |
42746728 |
gaaaaaaaataaaattggaattataagccctactaccgtgaagttcaacccaatatca |
42746671 |
T |
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