View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14229_high_23 (Length: 341)

Name: NF14229_high_23
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14229_high_23
NF14229_high_23
[»] chr4 (2 HSPs)
chr4 (1-93)||(16899505-16899597)
chr4 (1-93)||(18348020-18348112)
[»] chr3 (1 HSPs)
chr3 (1-93)||(13236379-13236471)
[»] chr5 (4 HSPs)
chr5 (240-326)||(2692694-2692780)
chr5 (91-171)||(2692545-2692625)
chr5 (91-166)||(2678954-2679029)
chr5 (33-92)||(40230975-40231035)
[»] chr1 (2 HSPs)
chr1 (1-90)||(10404067-10404156)
chr1 (1-90)||(6352354-6352442)
[»] chr2 (1 HSPs)
chr2 (1-93)||(42203291-42203382)
[»] scaffold0002 (2 HSPs)
scaffold0002 (4-91)||(197865-197952)
scaffold0002 (12-91)||(256308-256387)
[»] scaffold1079 (1 HSPs)
scaffold1079 (1-93)||(512-604)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 16899597 - 16899505
Alignment:
Q  1 atagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16899597 atagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 16899505  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 18348112 - 18348020
Alignment:
Q  1 atagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 93  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18348112 atagatttatgaatggaataaaaaatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 18348020  T

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Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 13236379 - 13236471
Alignment:
Q  1 atagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 93  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13236379 atagatttatgaatggaataaaaaatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 13236471  T

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Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 240 - 326
Target Start/End: Original strand, 2692694 - 2692780
Alignment:
Q  240 ctattgcttgttcaaacagccatgtgaatggtcaggttgataaacgtcgtactggaatgctcccgtttgttttttatgatacttttg 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2692694 ctattgcttgttcaaacagccatgtgaatggtcaggttgataaacgccgtactggaatgctcccgtttgttttttatgatacttttg 2692780  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 2692545 - 2692625
Alignment:
Q  91 cagttagcaacagccttattttcaaattcacctttcatgcaaggagctccaaatggttatgtcagctttagaaggtgtata 171  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  2692545 cagttagcaacagctttattttcaaattcacctttcaagcaaggagctccaaacggttatgtcagctttagaaggtgtata 2692625  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 2678954 - 2679029
Alignment:
Q  91 cagttagcaacagccttattttcaaattcacctttcatgcaaggagctccaaatggttatgtcagctttagaaggt 166  Q
    |||||| |||| || |||||| | ||||||||||||| |||||||| ||||||||||||||||||||| |||||||    
T  2678954 cagttatcaactgcattatttgcgaattcacctttcaagcaaggagttccaaatggttatgtcagcttaagaaggt 2679029  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 40230975 - 40231035
Alignment:
Q  33 tttacagacaaaagtattcggttattggg-aaaaaatcaatatacttttaatgtcgaatca 92  Q
    |||| ||||||||||||| |||||||||| |||||||||||| |||||||| |||||||||    
T  40230975 tttatagacaaaagtatttggttattgggaaaaaaatcaatacacttttaacgtcgaatca 40231035  T

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Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 10404156 - 10404067
Alignment:
Q  1 atagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaat 90  Q
    ||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10404156 atagatttatgaatggaataaaatatataatatttacaaacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaat 10404067  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 6352354 - 6352442
Alignment:
Q  1 atagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaat 90  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  6352354 atagatttatgaatggaataaaatatgtaatatttacagacaaaagtattc-attattgggaaaaaatcaatatacttttaatgtcgaat 6352442  T

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Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 42203291 - 42203382
Alignment:
Q  1 atagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 93  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||||||    
T  42203291 atagatttatgaatggaataatatatgcaatatttacagacaaaagtgttcggttatt-gtaaaaattcaatatacttttaatgtcgaatcag 42203382  T

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Target: scaffold0002 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 197865 - 197952
Alignment:
Q  4 gatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatc 91  Q
    |||||||| ||||||| ||||| ||| |||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  197865 gatttatggatggaatcaaatacgcagtatttacagaaaaaagtcttcgtttattgggaaagaatcaatatacttttaatgtcgaatc 197952  T

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Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 256308 - 256387
Alignment:
Q  12 aatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatc 91  Q
    |||||||| ||||| ||| |||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  256308 aatggaatcaaatacgcagtatttacagaaaaaagtcttcgtttattgggaaagaatcaatatacttttaatgtcgaatc 256387  T

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Target: scaffold1079 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1079
Description:

Target: scaffold1079; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 604 - 512
Alignment:
Q  1 atagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag 93  Q
    ||||||||||| ||||||| ||||||  | || ||||||||||||||||||||||| |||  |||||||||||||||| ||||||||||||||    
T  604 atagatttatggatggaatcaaatatatagtagttacagacaaaagtattcggttagtggtgaaaaatcaatatacttctaatgtcgaatcag 512  T

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