View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_high_24 (Length: 335)
Name: NF14229_high_24
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 40319120 - 40319263
Alignment:
| Q |
1 |
ccagactccatgagaacgtgaaaaagtcctaagcctcttatttataattattcatataaaaatggaggtcggtttaatcacatttagagattgattcaag |
100 |
Q |
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| T |
40319120 |
ccagactccatgagaacgtgaaaaagtcctaagcctcttatttatagttattcatataata-------------taatcacatttagagattgattcaag |
40319206 |
T |
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| Q |
101 |
tgcgtcatgagtag----tataaattttatttcagtttgtaggagtcttttatcttt |
153 |
Q |
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| T |
40319207 |
tgcgtcatgagtagtatatataaactttatttcagtttgttggagtcttttatcttt |
40319263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 327
Target Start/End: Original strand, 40319271 - 40319310
Alignment:
| Q |
288 |
ctaagctttaaatccgtaatgtacttatttcatatttttc |
327 |
Q |
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| T |
40319271 |
ctaagctttaaatccgtaatgtacttatttcatatttttc |
40319310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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