View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_high_26 (Length: 327)
Name: NF14229_high_26
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 33173532 - 33173776
Alignment:
| Q |
13 |
atgaaagtgaaatataaagtttctaccacctatcattgacaaacaaatggacaaattgagctatcaaatgacgagatcaagacaattctcgaaaaaggtt |
112 |
Q |
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| T |
33173532 |
atgaaagtgaaacataaagtttctaccacctatcattgacaaacaagtgtacaaattgagctatcaaatgaagagatcaagacaattctcgaaaaaggtt |
33173631 |
T |
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| Q |
113 |
taaacccctttcgaagggattggtctctccagttacatgatgttcattgggcatacaaatctatctatataagagcatctacgactgagatcctcaattt |
212 |
Q |
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| T |
33173632 |
taaaccc-tctcgaagggattggtctctccatttacatgatgttcattgggcatgcaaatctgtctatacaagagcatctacgattaagatcctcaattt |
33173730 |
T |
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| Q |
213 |
tgaggtcttaattgagttccacgtgtacacatcactctttcataaa |
258 |
Q |
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| T |
33173731 |
tgaggtcttaaatgagtcgcacgcgtacacatcactcttttataaa |
33173776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 46208954 - 46209012
Alignment:
| Q |
199 |
gagatcctcaattttgaggtcttaattgagttccacgtgtacacatcactctttcataa |
257 |
Q |
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| T |
46208954 |
gagatcctcaactttgaggtcttaaatgagttccacatgaaaacatcactttttaataa |
46209012 |
T |
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