View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_high_37 (Length: 246)
Name: NF14229_high_37
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 29197886 - 29197658
Alignment:
| Q |
1 |
aatatccgaaacggcgattcgtgccaccccaatagggcgaacacttttgaacttcttgcattgcacctcaaatgtgattgaccttgcatgcaatggcatg |
100 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29197886 |
aatatccaaaacggcgattcgtgtcaccccaatagggcgaacacttttgaacttcttgcattgcacctcaaatgtgattgaccttgcatgcaatggcatg |
29197787 |
T |
|
| Q |
101 |
ttcaacaaaaacttttcattccatgaaagaaaactcgagttttttccacaatcgtcattatctttcaatgttttcgttgtgtaacatttaagagactcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| ||||||||||||| |
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| T |
29197786 |
ttcaacaaaaacttttcattccatgaaagaaaactcgagttttttccacaatcgtctttatttttcactgttttcgttgtgtaacaattaagagactcac |
29197687 |
T |
|
| Q |
201 |
ttcgaacgacaacgtatgcatcctcagtt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
29197686 |
ctcgaacgacaacgtatgcatcctcagtt |
29197658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 12271164 - 12270940
Alignment:
| Q |
1 |
aatatccgaaacggcgattcgtgccaccccaatagggcgaacacttttgaacttcttgcattgcacctcaaatgtgattgaccttgcatgcaatggcatg |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12271164 |
aatatccgaaacggcgattcttgccaccccaatagggcgaacacttttgaacttcttgcattgcacctcaaacgtgattgaccttgcatgcaatggcatg |
12271065 |
T |
|
| Q |
101 |
ttcaacaaaaacttttcattccatgaaagaaaactcgagttttttccacaatcgtcattatctttcaatgttttcgttgtgtaacatttaagagactcac |
200 |
Q |
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| T |
12271064 |
ttcaacaaaaacttctcattccatgaaagaaaacttgagtttttcccacaattatcattatctttcaccgttttcgttgtgtaacaattaagagactcac |
12270965 |
T |
|
| Q |
201 |
ttcgaacgacaacgtatgcatcctc |
225 |
Q |
| |
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|||||| ||||||||||||||||| |
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| T |
12270964 |
ctcgaacaacaacgtatgcatcctc |
12270940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 12287830 - 12287605
Alignment:
| Q |
1 |
aatatccgaaacggcgattcgtgccaccccaatagggcgaacacttttgaacttcttgcattgcacctcaaatgtgattgaccttgcatgcaatggcatg |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12287830 |
aatatccgaaacggcgattcttgccaccccaataggtcgaacacttttaaacttcttgcattgcacctcaaacgtgattgaccttgcatgcaatggcatg |
12287731 |
T |
|
| Q |
101 |
ttcaacaaaaacttttcattccatgaaagaaaactcgagttttttccacaatcgtcattatctttcaatgttttcgttgtgtaacatttaagagactcac |
200 |
Q |
| |
|
|| || |||||||| ||||||||||||||||||||||||||||| | |||||| || |||||||||| ||| ||||| |||||||| ||||||||||||| |
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| T |
12287730 |
tttaataaaaacttctcattccatgaaagaaaactcgagtttttcctacaatcatcgttatctttcactgtcttcgtcgtgtaacaattaagagactcac |
12287631 |
T |
|
| Q |
201 |
ttcgaacgacaacgtatgcatcctca |
226 |
Q |
| |
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|||||| ||||| |||||||||||| |
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|
| T |
12287630 |
ctcgaacaacaacatatgcatcctca |
12287605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 12257157 - 12256936
Alignment:
| Q |
4 |
atccgaaacggcgattcgtgccaccccaatagggcgaacacttttgaacttcttgcattgcacctcaaatgtgattgaccttgcatgcaatggcatgttc |
103 |
Q |
| |
|
|||||||| || |||| ||||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12257157 |
atccgaaagagcaattcttgccaccccaataggacgtacacttttaaacttcttgcattgcacctcaaaagtgattgaccttgcatgcaatggcatgttc |
12257058 |
T |
|
| Q |
104 |
aacaaaaacttttcattccatgaaagaaaactcgagttttttccacaatcgtcattatctttcaatgttttcgttgtgtaacatttaagagactcacttc |
203 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||| || |
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| T |
12257057 |
aacaaaaacttctcattccatgaaagaaaactcgagtttttcccacaattatcattatctttcaccgtttttgttgtgtaacaattaagagactcacctc |
12256958 |
T |
|
| Q |
204 |
gaacgacaacgtatgcatcctc |
225 |
Q |
| |
|
|||| ||||||||||||||||| |
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| T |
12256957 |
gaacaacaacgtatgcatcctc |
12256936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 12264549 - 12264328
Alignment:
| Q |
4 |
atccgaaacggcgattcgtgccaccccaatagggcgaacacttttgaacttcttgcattgcacctcaaatgtgattgaccttgcatgcaatggcatgttc |
103 |
Q |
| |
|
|||||||| || |||| ||||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12264549 |
atccgaaagagcaattcttgccaccccaataggacgtacacttttaaacttcttgcattgcacctcaaaagtgattgaccttgcatgcaatggcatgttc |
12264450 |
T |
|
| Q |
104 |
aacaaaaacttttcattccatgaaagaaaactcgagttttttccacaatcgtcattatctttcaatgttttcgttgtgtaacatttaagagactcacttc |
203 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||| || |
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| T |
12264449 |
aacaaaaacttctcattccatgaaagaaaactcgagtttttcccacaattatcattatctttcaccgtttttgttgtgtaacaattaagagactcacctc |
12264350 |
T |
|
| Q |
204 |
gaacgacaacgtatgcatcctc |
225 |
Q |
| |
|
|||| ||||||||||||||||| |
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| T |
12264349 |
gaacaacaacgtatgcatcctc |
12264328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 12267251 - 12267030
Alignment:
| Q |
4 |
atccgaaacggcgattcgtgccaccccaatagggcgaacacttttgaacttcttgcattgcacctcaaatgtgattgaccttgcatgcaatggcatgttc |
103 |
Q |
| |
|
|||||||||| | |||| ||| ||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
12267251 |
atccgaaacgccaattcttgctaccccaataggacgaacacttttaaacttcttgcattgcacctcaaacgtaattgaccttgcatgcaatggcatgttc |
12267152 |
T |
|
| Q |
104 |
aacaaaaacttttcattccatgaaagaaaactcgagttttttccaca---atcgtcattatctttcaatgttttcgttgtgtaacatttaagagactcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||| || |||||||||||||| ||||||||||||| |
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|
| T |
12267151 |
aacaaaaacttttcattccatgaaaggaaactcgaattttttccacaattatcgttgttatctttcagcgtcttcgttgtgtaacaattaagagactcac |
12267052 |
T |
|
| Q |
201 |
ttcgaacgacaacgtatgcatc |
222 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
12267051 |
ctcgaacgacaacgtatgcatc |
12267030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 12282977 - 12282756
Alignment:
| Q |
4 |
atccgaaacggcgattcgtgccaccccaatagggcgaacacttttgaacttcttgcattgcacctcaaatgtgattgaccttgcatgcaatggcatgttc |
103 |
Q |
| |
|
|||||||||| | |||| ||| ||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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|
| T |
12282977 |
atccgaaacgccaattcttgctaccccaataggacgaacacttttaaacttcttgcattgcacctcaaacgtaattgaccttgcatgcaatggcatgttc |
12282878 |
T |
|
| Q |
104 |
aacaaaaacttttcattccatgaaagaaaactcgagttttttccaca---atcgtcattatctttcaatgttttcgttgtgtaacatttaagagactcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||| || |||||||||||||| ||||||||||||| |
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|
| T |
12282877 |
aacaaaaacttttcattccatgaaaggaaactcgaattttttccacaattatcgttgttatctttcagcgtcttcgttgtgtaacaattaagagactcac |
12282778 |
T |
|
| Q |
201 |
ttcgaacgacaacgtatgcatc |
222 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
12282777 |
ctcgaacgacaacgtatgcatc |
12282756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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