View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14229_high_6 (Length: 583)

Name: NF14229_high_6
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14229_high_6
NF14229_high_6
[»] chr3 (15 HSPs)
chr3 (15-567)||(9336556-9337108)
chr3 (15-375)||(9329852-9330212)
chr3 (38-286)||(9395298-9395549)
chr3 (492-564)||(9330347-9330419)
chr3 (22-115)||(41980877-41980970)
chr3 (16-117)||(9756397-9756498)
chr3 (15-115)||(41985644-41985744)
chr3 (15-112)||(9494811-9494908)
chr3 (16-116)||(9695615-9695715)
chr3 (15-115)||(9343861-9343961)
chr3 (15-115)||(9407382-9407482)
chr3 (15-115)||(9448330-9448430)
chr3 (36-115)||(9485969-9486048)
chr3 (36-115)||(13864241-13864320)
chr3 (15-116)||(9617462-9617563)
[»] chr7 (1 HSPs)
chr7 (40-124)||(450102-450186)
[»] chr6 (7 HSPs)
chr6 (36-123)||(7025793-7025880)
chr6 (17-124)||(7041514-7041621)
chr6 (36-123)||(7029850-7029937)
chr6 (36-126)||(7012857-7012947)
chr6 (36-126)||(9170854-9170944)
chr6 (35-115)||(7046875-7046955)
chr6 (36-126)||(9159484-9159574)
[»] chr1 (2 HSPs)
chr1 (15-59)||(4439876-4439920)
chr1 (15-51)||(18991220-18991256)
[»] chr2 (1 HSPs)
chr2 (15-56)||(20694360-20694401)


Alignment Details
Target: chr3 (Bit Score: 529; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 15 - 567
Target Start/End: Original strand, 9336556 - 9337108
Alignment:
Q  15 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336556 agcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 9336655  T
Q  115 atccatacaggaacacaataattttcatatctatccaccagcaacaactcaaactcactactctcaaccaagaatttattttgcccaccaaacaccggct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9336656 atccatacaggaacacaataattttcatatctatccaccagcaacaactcaaactcactactctcgaccaagaatttattttgcccaccaaacaccggct 9336755  T
Q  215 cagcgatcaaatgagtggtcaaatccggtccaatcatgacagtccgaccagctttgtctaccacacaaggccatcctttaaaaacacaagcatttcctcc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336756 cagcgatcaaatgagtggtcaaatccggtccaatcatgacagtccgaccagctttgtctaccacacaaggccatcctttaaaaacacaagcatttcctcc 9336855  T
Q  315 atgagaggttggcatgttgggtatcatggtccaactgtcgtccccacaacaaaacatcatcggctccagagagaagtcagatttaagcgtgacgataaca 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9336856 atgagaggttggcatgttgggtatcatggtccaactgtcgtccccacaacaaaacatcatcggctccagagagaagtcagatttaagtgtgacgataaca 9336955  T
Q  415 ggacgatgttccccgtgacacacggcagcaacagaaaagctaaagaaacttgcatctcctccaatcaggaggtgcatgtaggacatgcaaccgagaactc 514  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9336956 ggacgatgttccctgtgacacacggcagcaacataaaagctaaagaaacttgcatctcctccaatcaggaggtgcatgtaggacatgcaaccgagaattc 9337055  T
Q  515 gaagcgagagtttgttaaagtcaagtacattattgaaatctgatgataaaagt 567  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9337056 gaagcgagagtttgttaaagtcaagtacattattgaaatctgatgataaaagt 9337108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 15 - 375
Target Start/End: Original strand, 9329852 - 9330212
Alignment:
Q  15 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 114  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  9329852 agcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattcgccaacttgacccaccttttctctttctcatcaagcctaaacacatca 9329951  T
Q  115 atccatacaggaacacaataattttcatatctatccaccagcaacaactcaaactcactactctcaaccaagaatttattttgcccaccaaacaccggct 214  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||    
T  9329952 atccatacaggaacacgataattttcatatctatccaccagcaacaactcaaactcactactctcgaccaagaatttacttttcccaccaaacaccggct 9330051  T
Q  215 cagcgatcaaatgagtggtcaaatccggtccaatcatgacagtccgaccagctttgtctaccacacaaggccatcctttaaaaacacaagcatttcctcc 314  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| ||||||||||  ||||||||||||||| ||||||||||    
T  9330052 cagcgatcaaatgagtggttaaatccggtccaatcatgaaagtccgaccagttttgtctacaacacaaggccgccctttaaaaacacaaacatttcctcc 9330151  T
Q  315 atgagaggttggcatgttgggtatcatggtccaactgtcgtccccacaacaaaacatcatc 375  Q
    ||| ||| ||| ||||||||| ||  | |||||||| ||||||||||||| ||||||||||    
T  9330152 atgggagtttgacatgttggggatggtagtccaactatcgtccccacaacgaaacatcatc 9330212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 38 - 286
Target Start/End: Original strand, 9395298 - 9395549
Alignment:
Q  38 ccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacaggaacac---aata 134  Q
    ||||||||||||||  |||||||||||| |||| ||| |||||| ||||||  |||||||||||||||||||||||||||| ||||  |||||    ||     
T  9395298 ccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttacaataacacgatcatc 9395397  T
Q  135 attttcatatctatccaccagcaacaactcaaactcactactctcaaccaagaatttattttgcccaccaaacaccggctcagcgatcaaatgagtggtc 234  Q
    ||||| |||| ||||||| |||||||||| ||| |||||| |||| |||||||||||| |||  || |||| ||| |||||||| || ||||||  | ||    
T  9395398 atttttatatatatccactagcaacaactgaaagtcactagtctcgaccaagaatttactttctccgccaatcacaggctcagctataaaatgatagctc 9395497  T
Q  235 aaatccggtccaatcatgacagtccgaccagctttgtctaccacacaaggcc 286  Q
    || || | | ||||||| ||||||||||||| ||||||||||| ||||||||    
T  9395498 aagtctgattcaatcataacagtccgaccagttttgtctaccatacaaggcc 9395549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 492 - 564
Target Start/End: Original strand, 9330347 - 9330419
Alignment:
Q  492 gtaggacatgcaaccgagaactcgaagcgagagtttgttaaagtcaagtacattattgaaatctgatgataaa 564  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  9330347 gtaggacatgcaaccgagaactcgaaacgagagtttgttaaagtcaagcacattattgaaatctgaagataaa 9330419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 41980877 - 41980970
Alignment:
Q  22 aacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 115  Q
    |||||||||||||||||||||||||||||  |||| |||||| |||||| |||||||||  | |||||||||| | ||||||||||||||||||    
T  41980877 aacgaacatccattccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctctttcttagcaagcctaaacacatcaa 41980970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 9756397 - 9756498
Alignment:
Q  16 gcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 115  Q
    |||||||| ||||| || | ||| || ||||||||| |||| || ||||||  || |||||||||||||||||||||||||||||||||| |||||||||    
T  9756397 gcagagaatgaacagccttccccgaaaaacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatcaagcctatacacatcaa 9756496  T
Q  116 tc 117  Q
    ||    
T  9756497 tc 9756498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 41985644 - 41985744
Alignment:
Q  15 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 114  Q
    |||||| |||||||||||||||||||||||||||||  |||| |||||| ||| || |||||||||  | ||||| ||||||||||| || |||||||||    
T  41985644 agcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatca 41985743  T
Q  115 a 115  Q
    |    
T  41985744 a 41985744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 9494908 - 9494811
Alignment:
Q  15 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacat 112  Q
    |||||| |||||||||||||||||||||||||||||| |||| |||||| || |||  || ||||| ||  |||| |||||||||||||||| |||||    
T  9494908 agcagaaaacgaacatccattccccaagaacaaaaccctatcccctaaactcatcaaattcacccatctcatctccttctcatcaagcctaagcacat 9494811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 9695715 - 9695615
Alignment:
Q  16 gcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 115  Q
    ||||||||||||||  | | |||||| ||||||||| |||| |||||||| |||| |||||||||| | ||||| |||||||||||||| || |||||||    
T  9695715 gcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattggtcaacttgacccacttcttctccttctcatcaagcctgaatacatcaa 9695616  T
Q  116 t 116  Q
    |    
T  9695615 t 9695615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 9343861 - 9343961
Alignment:
Q  15 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 114  Q
    |||||| ||||||||| |||||||||||||||||||  |||| |||||| | || | ||| |||||| | |||||  ||||||||||| |||||||||||    
T  9343861 agcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatcaagcttaaacacatca 9343960  T
Q  115 a 115  Q
    |    
T  9343961 a 9343961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 9407382 - 9407482
Alignment:
Q  15 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 114  Q
    |||||| || |||||||||||| | |||||||||||| |||| |||||| || ||| ||| ||||| ||||| |  ||||| ||||| ||||||||||||    
T  9407382 agcagaaaatgaacatccattcacaaagaacaaaaccctatcccctaaactcatcaacttcacccatcttttattcttctcgtcaagtctaaacacatca 9407481  T
Q  115 a 115  Q
    |    
T  9407482 a 9407482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 9448330 - 9448430
Alignment:
Q  15 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 114  Q
    |||||| ||||||||  |||||||||||||||||||  |||| |||||| | || | ||| |||||  | ||||| ||||||| |||| |||||||||||    
T  9448330 agcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcataaagcttaaacacatca 9448429  T
Q  115 a 115  Q
    |    
T  9448430 a 9448430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 9486048 - 9485969
Alignment:
Q  36 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 115  Q
    |||||| ||||||||| |||| || |||||  ||| ||  |||||| | ||||| |||||||||||||||||||||||||    
T  9486048 ccccaaaaacaaaaccatatcccccaaatttctcacctccacccacttcttctccttctcatcaagcctaaacacatcaa 9485969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 13864241 - 13864320
Alignment:
Q  36 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 115  Q
    |||||| ||||||||| |||| || |||||  ||| ||  |||||| |||||||  ||||||||||||||||||||||||    
T  13864241 ccccaaaaacaaaaccctatcccccaaatttctcacctccacccactttttctccctctcatcaagcctaaacacatcaa 13864320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 9617563 - 9617462
Alignment:
Q  15 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 114  Q
    |||||| || |||||||||||| | | |||||||||| |||| ||||||||  ||| ||| |||||  | ||||||||||||| || ||| ||||| |||    
T  9617563 agcagaaaatgaacatccattcacaaggaacaaaaccctatcccctaaatttttcaacttcacccatttcttctctttctcatgaaacctgaacacttca 9617464  T
Q  115 at 116  Q
    ||    
T  9617463 at 9617462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 450186 - 450102
Alignment:
Q  40 aagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacag 124  Q
    ||||||||||   |||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  450186 aagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacag 450102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 7025793 - 7025880
Alignment:
Q  36 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccataca 123  Q
    |||||||||||||||| ||||||||||| |||||| ||| |||||| | ||||| ||||||| |||| |||||| |||||||| ||||    
T  7025793 ccccaagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7025880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 7041514 - 7041621
Alignment:
Q  17 cagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaat 116  Q
    |||||||||||||| | |  ||||||||||||||| |||| |||||| | |||| ||| |||||| | ||||| ||||||| |||  |||||| ||||||    
T  7041514 cagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctccttctcattaagtttaaacaaatcaat 7041613  T
Q  117 ccatacag 124  Q
    ||||||||    
T  7041614 ccatacag 7041621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 7029850 - 7029937
Alignment:
Q  36 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccataca 123  Q
    |||||||||||||||| |||| || ||| |||||| ||| |||||| | ||||| ||||||| |||| |||||| |||||||| ||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7029937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 7012857 - 7012947
Alignment:
Q  36 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacagga 126  Q
    |||||||||||||| | ||||||||||| | |||| ||| |||||| | ||||| ||||||| |||| |||||| |||||| | |||||||    
T  7012857 ccccaagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaattcttacagga 7012947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 9170854 - 9170944
Alignment:
Q  36 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacagga 126  Q
    |||||||||||||||| |||| |||||| |||| |  || |||||| | ||||| ||||||| |||| |||||| |||||||| |||||||    
T  9170854 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacagga 9170944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 7046875 - 7046955
Alignment:
Q  35 tccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 115  Q
    |||||||||||||||| ||||| |||||| |||| | ||| |||||| | ||||| ||||||| |||| |||||| |||||    
T  7046875 tccccaagaacaaaactttatcccctaaactcgttaacttcacccacttcttctccttctcattaagcttaaacaaatcaa 7046955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 9159574 - 9159484
Alignment:
Q  36 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacagga 126  Q
    |||||||||||||||| |||| |||||| |||| |  || |||||| | ||||| ||||| | |||| |||||| |||||||| |||||||    
T  9159574 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcgttaagcttaaacaaatcaatccttacagga 9159484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 4439876 - 4439920
Alignment:
Q  15 agcagagaacgaacatccattccccaagaacaaaaccttatctcc 59  Q
    |||||| |||||||||||||||||||| ||||||||| |||||||    
T  4439876 agcagaaaacgaacatccattccccaaaaacaaaaccctatctcc 4439920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 18991220 - 18991256
Alignment:
Q  15 agcagagaacgaacatccattccccaagaacaaaacc 51  Q
    |||||| ||||||||||||||||||||||||||||||    
T  18991220 agcagaaaacgaacatccattccccaagaacaaaacc 18991256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 20694401 - 20694360
Alignment:
Q  15 agcagagaacgaacatccattccccaagaacaaaaccttatc 56  Q
    |||||| |||||||||||||||||||| ||||||||| ||||    
T  20694401 agcagaaaacgaacatccattccccaaaaacaaaaccctatc 20694360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University