View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14229_high_9 (Length: 529)
Name: NF14229_high_9
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_high_9 |
 | |
|
| [»] scaffold0794 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 17 - 521
Target Start/End: Complemental strand, 34784800 - 34784307
Alignment:
| Q |
17 |
atttatctttattcctcatgtatgaaactctaacacaaacaccagacacaacacagctttgatactaacatgtcaacactaataataatttaaaatatga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
34784800 |
atttatctttattcctcatgtatgaaactctaacacaaacaccagacacaacacggctttgatactaacatatcgacactaataataatttaaaatatga |
34784701 |
T |
|
| Q |
117 |
aagtgattgtaggtaagcaaatgtggacactaaacacgtctaaattaatgtgtcggtattaacaattgatgaagatacataccttgagtaaaacggcgtc |
216 |
Q |
| |
|
||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
34784700 |
aagtgcttgtacgtaagcaaatgt-----------acgtctaaattaatgtgtcggtattaacaattgatgaacatacataccttgagtaaaacggcgtc |
34784612 |
T |
|
| Q |
217 |
agcaggagggatagacttgaacatatcaccactaacaaatttcaaattttcatttccagttaagttaccaacaacctgtggttgatcaaaaacagtgcat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34784611 |
agcaggagggatagacttgaacatatcaccactaacaaagttcaaattttcatttccagttaagttaccaacaacctgtggttgatcaaaaacagtgcat |
34784512 |
T |
|
| Q |
317 |
ttgatctgaggaaatgcttcatgaataagctttgtgacagcaccggttccacccgcgacatcaacaagagattccaaaccctcaaacacattcttgttct |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34784511 |
ttgatctgaggaaatgcttcatgaataagctttgtgacagcaccggttccacccgcgacatcaacaagagattccaaaccctcaaacacattcttgttct |
34784412 |
T |
|
| Q |
417 |
catgaagagcaagcttaaacattctagaatcagcagccatagcatcttgaaacaaactcaaagtaccagattcagaatctttgttaagaaaatcccaata |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34784411 |
catgaagagcaagcttaaacattctagaatcagcagccatagcatcttgaaacaaactcaaagtaccagattcagaatctttgttaagaaaatcccaata |
34784312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 176 - 514
Target Start/End: Complemental strand, 34776440 - 34776102
Alignment:
| Q |
176 |
taacaattgatgaagatacataccttgagtaaaacggcgtcagcaggagggatagacttgaacatatcaccactaacaaatttcaaattttcatttccag |
275 |
Q |
| |
|
||||||||| |||| || |||||||| |||||||| || ||||||| ||||||||| ||||||||||| |||| |||||| ||||||||||||||||||| |
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|
| T |
34776440 |
taacaattgttgaacatgcataccttaagtaaaacagcatcagcagaagggatagatttgaacatatctccaccaacaaagttcaaattttcatttccag |
34776341 |
T |
|
| Q |
276 |
ttaagttaccaacaacctgtggttgatcaaaaacagtgcatttgatctgaggaaatgcttcatgaataagctttgtgacagcaccggttccacccgcgac |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||||| || ||||| ||| |||| || ||||| | || |
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|
| T |
34776340 |
ttaagttaccaacaacctgtggttgatcaaaaacagtacatttaaggtgaggaaaaatttcatgaatgagttttgtaacaccaccagtaccacctccaac |
34776241 |
T |
|
| Q |
376 |
atcaacaagagattccaaaccctcaaacacattcttgttctcatgaagagcaagcttaaacattctagaatcagcagccatagcatcttgaaacaaactc |
475 |
Q |
| |
|
|||||||||||| ||||||||||| || || || ||||| || ||| |||||||||||||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
34776240 |
atcaacaagagactccaaaccctcgaaaacgcgtttattctcttggagaacaagcttaaacattctagaatcagatgccatagcatcttgaaacatactc |
34776141 |
T |
|
| Q |
476 |
aaagtaccagattcagaatctttgttaagaaaatcccaa |
514 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
34776140 |
aaagtactagattcagaatctttgttaagaaaatcccaa |
34776102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 193 - 507
Target Start/End: Original strand, 11468020 - 11468334
Alignment:
| Q |
193 |
acataccttgagtaaaacggcgtcagcaggagggatagacttgaacatatcaccactaacaaatttcaaattttcatttccagttaagttaccaacaacc |
292 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||| || ||||||||||| |||| |||||| |||||||||| | |||||| ||||||| | |||||| |
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|
| T |
11468020 |
acataccttgagtaaaacagcatctgcaggagggattgatttgaacatatctccaccaacaaagttcaaattttgagttccagataagttagccacaacc |
11468119 |
T |
|
| Q |
293 |
tgtggttgatcaaaaacagtgcatttgatctgaggaaatgcttcatgaataagctttgtgacagcaccggttccacccgcgacatcaacaagagattcca |
392 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || |||||| |||||||||| || |||| ||| | || || ||||| || |||||||| | |||||||| |
|
|
| T |
11468120 |
tgtggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagattcca |
11468219 |
T |
|
| Q |
393 |
aaccctcaaacacattcttgttctcatgaagagcaagcttaaacattctagaatcagcagccatagcatcttgaaacaaactcaaagtaccagattcaga |
492 |
Q |
| |
|
||||||||||||||| || || | |||||||||||||||||| |||||||| ||||| || ||||||||| || | || |||||||||| |
|
|
| T |
11468220 |
aaccctcaaacacatggctgcagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacagaccaagtttatcagattcaga |
11468319 |
T |
|
| Q |
493 |
atctttgttaagaaa |
507 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11468320 |
atctttgttaagaaa |
11468334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 193 - 507
Target Start/End: Complemental strand, 11523441 - 11523127
Alignment:
| Q |
193 |
acataccttgagtaaaacggcgtcagcaggagggatagacttgaacatatcaccactaacaaatttcaaattttcatttccagttaagttaccaacaacc |
292 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||| || ||||||||||| |||| |||||| |||||||||| | |||||| ||||||| | |||||| |
|
|
| T |
11523441 |
acataccttgagtaaaacagcatctgcaggagggattgatttgaacatatctccaccaacaaagttcaaattttgagttccagataagttagccacaacc |
11523342 |
T |
|
| Q |
293 |
tgtggttgatcaaaaacagtgcatttgatctgaggaaatgcttcatgaataagctttgtgacagcaccggttccacccgcgacatcaacaagagattcca |
392 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || |||||| |||||||||| || |||| ||| | || || ||||| || |||||||| | |||||||| |
|
|
| T |
11523341 |
tgtggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagattcca |
11523242 |
T |
|
| Q |
393 |
aaccctcaaacacattcttgttctcatgaagagcaagcttaaacattctagaatcagcagccatagcatcttgaaacaaactcaaagtaccagattcaga |
492 |
Q |
| |
|
||||||||||||||| || || | |||||||||||||||||| |||||||| ||||| || ||||||||| || | || |||||||||| |
|
|
| T |
11523241 |
aaccctcaaacacatggctgcagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacagaccaagtttatcagattcaga |
11523142 |
T |
|
| Q |
493 |
atctttgttaagaaa |
507 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11523141 |
atctttgttaagaaa |
11523127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 196 - 514
Target Start/End: Complemental strand, 11548057 - 11547739
Alignment:
| Q |
196 |
taccttgagtaaaacggcgtcagcaggagggatagacttgaacatatcaccactaacaaatttcaaattttcatttccagttaagttaccaacaacctgt |
295 |
Q |
| |
|
||||||||||||||| || || |||||||||||||| ||||||||||| |||| |||||||||||||||||||| ||||| |||||| | ||||||||| |
|
|
| T |
11548057 |
taccttgagtaaaacagcatctgcaggagggatagatttgaacatatctccaccaacaaatttcaaattttcatctccagacaagttagccacaacctgt |
11547958 |
T |
|
| Q |
296 |
ggttgatcaaaaacagtgcatttgatctgaggaaatgcttcatgaataagctttgtgacagcaccggttccacccgcgacatcaacaagagattccaaac |
395 |
Q |
| |
|
||||||||||| || |||||||||| | |||||| |||||||| || || ||||||| | | || ||||||| | |||||||| | ||| ||||||| |
|
|
| T |
11547957 |
ggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagactccaaac |
11547858 |
T |
|
| Q |
396 |
cctcaaacacattcttgttctcatgaagagcaagcttaaacattctagaatcagcagccatagcatcttgaaacaaactcaaagtaccagattcagaatc |
495 |
Q |
| |
|
| |||||||||| ||| ||| | |||||||| || || ||| |||||||||||||||||| |||||||||| ||||| | ||||||||| ||| |
|
|
| T |
11547857 |
cttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatc |
11547758 |
T |
|
| Q |
496 |
tttgttaagaaaatcccaa |
514 |
Q |
| |
|
|||||||||| | |||||| |
|
|
| T |
11547757 |
tttgttaagatagtcccaa |
11547739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 196 - 514
Target Start/End: Original strand, 11445033 - 11445351
Alignment:
| Q |
196 |
taccttgagtaaaacggcgtcagcaggagggatagacttgaacatatcaccactaacaaatttcaaattttcatttccagttaagttaccaacaacctgt |
295 |
Q |
| |
|
||||||||||||||| || || |||| ||||||||| | ||||||||| |||| |||||||||||||||||||| ||||| ||| || | ||||||||| |
|
|
| T |
11445033 |
taccttgagtaaaacagcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttcatctccagataaattggccacaacctgt |
11445132 |
T |
|
| Q |
296 |
ggttgatcaaaaacagtgcatttgatctgaggaaatgcttcatgaataagctttgtgacagcaccggttccacccgcgacatcaacaagagattccaaac |
395 |
Q |
| |
|
||||||||||| || |||||||||| | |||||| |||||||| || || ||||||| | | || ||||||| | |||||||| | ||| ||||||| |
|
|
| T |
11445133 |
ggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagactccaaac |
11445232 |
T |
|
| Q |
396 |
cctcaaacacattcttgttctcatgaagagcaagcttaaacattctagaatcagcagccatagcatcttgaaacaaactcaaagtaccagattcagaatc |
495 |
Q |
| |
|
| |||||||||| ||| ||| | |||||||| || || ||| |||||||||||||||||| |||||||||| ||||| | ||||||||| ||| |
|
|
| T |
11445233 |
cttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatc |
11445332 |
T |
|
| Q |
496 |
tttgttaagaaaatcccaa |
514 |
Q |
| |
|
|||||||||| | |||||| |
|
|
| T |
11445333 |
tttgttaagatagtcccaa |
11445351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 193 - 514
Target Start/End: Complemental strand, 11507829 - 11507508
Alignment:
| Q |
193 |
acataccttgagtaaaacggcgtcagcaggagggatagacttgaacatatcaccactaacaaatttcaaattttcatttccagttaagttaccaacaacc |
292 |
Q |
| |
|
||||||||| |||||||| || || |||| ||||||||| | ||||||||| |||| |||||||||||||||||||| ||||| ||| || | |||||| |
|
|
| T |
11507829 |
acataccttaagtaaaacagcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttcatctccagataaattggccacaacc |
11507730 |
T |
|
| Q |
293 |
tgtggttgatcaaaaacagtgcatttgatctgaggaaatgcttcatgaataagctttgtgacagcaccggttccacccgcgacatcaacaagagattcca |
392 |
Q |
| |
|
|||||||||||||| || |||||||||| | |||||| |||||||| || || ||||||| | | || ||||||| | |||||||| | ||| | || |
|
|
| T |
11507729 |
tgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagacttca |
11507630 |
T |
|
| Q |
393 |
aaccctcaaacacattcttgttctcatgaagagcaagcttaaacattctagaatcagcagccatagcatcttgaaacaaactcaaagtaccagattcaga |
492 |
Q |
| |
|
|||| |||||||||| ||| ||| | |||||||| || || ||| |||||||||||||||||| |||||||||| ||||| | ||||||||| |
|
|
| T |
11507629 |
aaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagt |
11507530 |
T |
|
| Q |
493 |
atctttgttaagaaaatcccaa |
514 |
Q |
| |
|
||||||||||||| | |||||| |
|
|
| T |
11507529 |
atctttgttaagatagtcccaa |
11507508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 203 - 514
Target Start/End: Complemental strand, 2476 - 2165
Alignment:
| Q |
203 |
agtaaaacggcgtcagcaggagggatagacttgaacatatcaccactaacaaatttcaaattttcatttccagttaagttaccaacaacctgtggttgat |
302 |
Q |
| |
|
|||||||| || || |||| ||||||||| | ||||||||| |||| |||||||||||||||||||| ||||| ||| || | |||||||||||||||| |
|
|
| T |
2476 |
agtaaaacagcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttcatctccagataaattggccacaacctgtggttgat |
2377 |
T |
|
| Q |
303 |
caaaaacagtgcatttgatctgaggaaatgcttcatgaataagctttgtgacagcaccggttccacccgcgacatcaacaagagattccaaaccctcaaa |
402 |
Q |
| |
|
|||| || |||||||||| | |||||| |||||||| || || ||||||| | | || ||||||| | |||||||| | ||| ||||||| ||||| |
|
|
| T |
2376 |
caaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagaccccaaaccttcaaa |
2277 |
T |
|
| Q |
403 |
cacattcttgttctcatgaagagcaagcttaaacattctagaatcagcagccatagcatcttgaaacaaactcaaagtaccagattcagaatctttgtta |
502 |
Q |
| |
|
||||| ||| ||| | |||||||| || || ||| |||||||||||||||||| |||||||||| ||||| | ||||||||| |||||||||| |
|
|
| T |
2276 |
cacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctttgtta |
2177 |
T |
|
| Q |
503 |
agaaaatcccaa |
514 |
Q |
| |
|
||| | |||||| |
|
|
| T |
2176 |
agatagtcccaa |
2165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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