View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14229_low_10 (Length: 530)
Name: NF14229_low_10
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 24 - 282
Target Start/End: Complemental strand, 8994461 - 8994203
Alignment:
| Q |
24 |
cacaagaactgaatagtcaacatcaatcaaatgctcctttttaacataattagtattttcatcgttgatggaagcactaacatcataattatcaaggttg |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
8994461 |
cacaagaactgaatagtcaacatcaatcaaatgctcctttttaacattattagtattttcatcattgattgaagcactaacatcataatcatcaaggttg |
8994362 |
T |
|
| Q |
124 |
aggaggcagttatccacaaccgcagcagaaacagaaacaacatgagagagaatccctgagttgttcagagcttccacaaaccacacatgattatcaaagt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8994361 |
aggaggcagttatccacaaccgcagcagaaacagaaacaacacgagagagaatccctgatttgttcagagcttccacaaaccacacatgattatcaaagt |
8994262 |
T |
|
| Q |
224 |
gatcattgcccatggaaacatcagtatctggttttgagaagaacaggaacaatctgcgt |
282 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8994261 |
gatcattacccatggaaacatcagtatctggttttgagaagaataggaacaatctgcgt |
8994203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 24 - 282
Target Start/End: Complemental strand, 9029118 - 9028860
Alignment:
| Q |
24 |
cacaagaactgaatagtcaacatcaatcaaatgctcctttttaacataattagtattttcatcgttgatggaagcactaacatcataattatcaaggttg |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
9029118 |
cacaagaactgaatagtcaacatcaatcaaatgctcctttttaacattattagtattttcatcattgattgaagcactaacatcataatcatcaaggttg |
9029019 |
T |
|
| Q |
124 |
aggaggcagttatccacaaccgcagcagaaacagaaacaacatgagagagaatccctgagttgttcagagcttccacaaaccacacatgattatcaaagt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9029018 |
aggaggcagttatccacaaccgcagcagaaacagaaacaacacgagagagaatccctgatttgttcagagcttccacaaaccacacatgattatcaaagt |
9028919 |
T |
|
| Q |
224 |
gatcattgcccatggaaacatcagtatctggttttgagaagaacaggaacaatctgcgt |
282 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9028918 |
gatcattacccatggaaacatcagtatctggttttgagaagaataggaacaatctgcgt |
9028860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 350 - 515
Target Start/End: Complemental strand, 8994189 - 8994024
Alignment:
| Q |
350 |
atatcttttaatcgaagaaacgaggaatatattatataaatgtattaaggatgactcaccaggtgaaattcatgatctcacaacagttatactccacgaa |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8994189 |
atatcttttaatcgaagaaacgaggaatatattatataaatgtattaaggatgactcaccaggtgaaattcatgatctcacaacagttatactccacgaa |
8994090 |
T |
|
| Q |
450 |
agttggagtaaattggtttgttaagattattgatgttgaagtaaagtgtatctatcatatcatttt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8994089 |
agttggagtaaattggtttgttaagattattgatgttgaagtaaagtgtatctatcatatcatttt |
8994024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 350 - 515
Target Start/End: Complemental strand, 9028846 - 9028681
Alignment:
| Q |
350 |
atatcttttaatcgaagaaacgaggaatatattatataaatgtattaaggatgactcaccaggtgaaattcatgatctcacaacagttatactccacgaa |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9028846 |
atatcttttaatcgaagaaacgaggaatatattatataaatgtattaaggatgactcaccaggtgaaattcatgatctcacaacagttatactccacgaa |
9028747 |
T |
|
| Q |
450 |
agttggagtaaattggtttgttaagattattgatgttgaagtaaagtgtatctatcatatcatttt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9028746 |
agttggagtaaattggtttgttaagattattgatgttgaagtaaagtgtatctatcatatcatttt |
9028681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 445 - 515
Target Start/End: Complemental strand, 9019349 - 9019279
Alignment:
| Q |
445 |
acgaaagttggagtaaattggtttgttaagattattgatgttgaagtaaagtgtatctatcatatcatttt |
515 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9019349 |
acgaaagttggagtaaattggtttgtgaagattattgatgttgaagtaacgtgtatctatcatatcatttt |
9019279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 9007227 - 9007172
Alignment:
| Q |
24 |
cacaagaactgaatagtcaacatcaatcaaatgctcctttttaacataattagtat |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9007227 |
cacaagaactgaatagtcaacatcaatcaaatgctcctttttaacattattagtat |
9007172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 9019458 - 9019407
Alignment:
| Q |
245 |
cagtatctggttttgagaagaacaggaacaatctgcgtcgagaaggagaagg |
296 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| |||||||||| ||||| |
|
|
| T |
9019458 |
cagtatctggttttgagatgaacatgaacaatctgagtcgagaaggggaagg |
9019407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 31 - 329
Target Start/End: Original strand, 44884041 - 44884348
Alignment:
| Q |
31 |
actgaatagtcaacatcaatcaaatgctcctttttaacataatta---gtattttcatcgttgatggaagcactaacatcataattatcaaggttgagga |
127 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||| |||| |||||||| || || | |||||||||| |||||||| ||| |||||||||| |
|
|
| T |
44884041 |
actgaataatcaacatcaatcaaatgctccttgataacattattattagtattttcgtcattacttgaagcactaatatcataatcatcgaggttgagga |
44884140 |
T |
|
| Q |
128 |
ggcagttatccacaaccgcagcagaaacagaaacaacatgagagagaatccctgagttgttcagagcttccacaaaccacacatgattatcaaagtgatc |
227 |
Q |
| |
|
|||||||||| ||| | || |||||| | ||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| | |
|
|
| T |
44884141 |
ggcagttatcaacagcagctgcagaatctgaaacaacacgagacagaatccctgagttgttgagagcttccacaaaccatgcatgattataaaagtgacc |
44884240 |
T |
|
| Q |
228 |
attgcccatggaaacatcagtatctggttttgagaagaacaggaacaatctgcgtcga------gaaggagaagggtttgacgacaaatgatcatactct |
321 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| |||||| |||||||||| |
|
|
| T |
44884241 |
atttcccatggaaacagcagtatctggttttgagaagaagaggaacaatctgagtcgagaaggtgaaggagaagggtttgaagacaaacgatcatactca |
44884340 |
T |
|
| Q |
322 |
tttatcat |
329 |
Q |
| |
|
| |||||| |
|
|
| T |
44884341 |
tctatcat |
44884348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University