View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_low_13 (Length: 474)
Name: NF14229_low_13
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 229 - 464
Target Start/End: Original strand, 3608968 - 3609203
Alignment:
| Q |
229 |
gtcacctgcaatggtgaaaacactggaccgagatattgtatggaaatggacaagatattgtggctgtgtgatgcatacgtcaattaggctttgatatcct |
328 |
Q |
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| T |
3608968 |
gtcacctgcaatggtgaaaacactggactgagatattgtatggaaatggacaagatattgtagctgtgtgatgcatacgtcaattaggctttgatatcct |
3609067 |
T |
|
| Q |
329 |
gaaatgggattcactggactaagatatttggacccactcaaagaccctccttcatgcaaaagtaagagaataaattaaagttaggcactttgctgaccta |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3609068 |
gaaatgggattcactggactaagatatttggacccactgaaagaccctccttcatgcaaaagcaagagaataaattaaagttaggcactttgctgaccta |
3609167 |
T |
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| Q |
429 |
cttcattcatcatctcatgtatgtatatatattctt |
464 |
Q |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
3609168 |
cttcattcatcatctcatgtatgtatatatgttctt |
3609203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 3608829 - 3608932
Alignment:
| Q |
90 |
aaatatgtaaaatacttagcctatatgacacttccttataaccaacagtgatcattgttgtacggacacagaaagcgagctaggttattggaatattgtt |
189 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3608829 |
aaatctgtaaaataattagcctatatgacacttccttataaccaacagtgatcattgttgtacggacacagaaagccagctaggttattggaatattgtt |
3608928 |
T |
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| Q |
190 |
cagt |
193 |
Q |
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|||| |
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| T |
3608929 |
cagt |
3608932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 3608771 - 3608812
Alignment:
| Q |
24 |
agacgtatgctcacaacccatgttcacaaagcataaacatag |
65 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3608771 |
agacgtatgctcacaacccatgttcgcaaagcataaacatag |
3608812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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