View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_low_15 (Length: 448)
Name: NF14229_low_15
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Original strand, 24845382 - 24845803
Alignment:
| Q |
17 |
actttctgcacttgaagtcgccattgttcggtcccaaaggaagacatgtaggagaataggaactttagtgtgtcgatgtaaggagagtttctggcttaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24845382 |
actttctgcacttgaagtcgccattgttcggtcccaaaggaagacatgtaggagaataggaactttagtgtgtcgatgtaaggagagtttctggcttaat |
24845481 |
T |
|
| Q |
117 |
gaaacagtgtcgtaacaacgaattgctccggttgatgaaaccatccatggaagaactctttgatttgaaagccttgaaactaccaataaccttgaagttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24845482 |
gaaacagtgtcgtaacaacgaattgctccggttgatgaaaccatccatggaagaactctttgatttgaaagccttgaaactaccaataaccttgaagttt |
24845581 |
T |
|
| Q |
217 |
ctgttgctagtttgtatagattgcttagccctgaacgtgtagctggtaaactttctttaccttcgtcgattaccgatgatgagatgaatataaaaccctg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24845582 |
ctgttgctagtttgtatagattgcttagccctgaacgtgtagctggtaaactttctttaccttcgtcgattaccgatgatgagatgaatataaaaccctg |
24845681 |
T |
|
| Q |
317 |
ttgatcacaaaattaatagatgaaacattcaacaataaatgagtttgtgtaacttaagcacatgtctcacttcatattgatgacatgttagtatttgaca |
416 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24845682 |
ttgatcacaaaattattagatgaaacattcaacaataaatgagtttgtgtaacttaagcacatgtctcacttcatattgatgacatgttagtattcgaca |
24845781 |
T |
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| Q |
417 |
cttcaaacacgatcggttctat |
438 |
Q |
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| T |
24845782 |
cttcaaactcgatcggttctat |
24845803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 44 - 273
Target Start/End: Complemental strand, 42044538 - 42044309
Alignment:
| Q |
44 |
tcggtcccaaaggaagacatgtaggagaataggaactttagtgtgtcgatgtaaggagagtttctggcttaatgaaacagtgtcgtaacaacgaattgct |
143 |
Q |
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||||||||||||||||||||| || ||||| |||||| | ||||||| || ||||| || |||||||| || ||||| ||||||||||| ||||||||| |
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| T |
42044538 |
tcggtcccaaaggaagacatggagcagaattggaactctggtgtgtctgtgcaaggatagcttctggctcaaggaaactgtgtcgtaacatcgaattgct |
42044439 |
T |
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| Q |
144 |
ccggttgatgaaaccatccatggaagaactctttgatttgaaagccttgaaactaccaataaccttgaagtttctgttgctagtttgtatagattgctta |
243 |
Q |
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|| ||||| || |||||||||||||| ||| |||| ||||| | ||||| ||||||||||| || |||| |||||||| ||||| || ||| |||||| |
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| T |
42044438 |
cctgttgaagataccatccatggaagtactttttggtttgacactcttgacactaccaataatctacaagtgtctgttgccagtttataaagactgctta |
42044339 |
T |
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| Q |
244 |
gccctgaacgtgtagctggtaaactttctt |
273 |
Q |
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|||| ||||| ||||| |||| | |||||| |
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| T |
42044338 |
gcccagaacgagtagcaggtacattttctt |
42044309 |
T |
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