View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14229_low_18 (Length: 429)
Name: NF14229_low_18
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 47634596 - 47635003
Alignment:
| Q |
19 |
ctcaaatacaaaagcacaaaatcctacttatctctaccagatttgttcaatgaacaaaaccacatccaacagcacctacaaatcaaacatcataaccctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47634596 |
ctcaaatacaaaagcacaaaatcctactcatctctaccagatttgttcaatgaacaaaaccacatccaacagcacctacaaatcaaacatcataaccctt |
47634695 |
T |
|
| Q |
119 |
ttctcttatctttcttccaacgccaccacaaacaatgaattctacaacacggtccccagcagaaacatctcaaactccgtatacggtctattcatgtgca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47634696 |
ttctcttatctttcttccaacgccaccacaaacaatgaattctacaacacggtccccagcagaaacatctcaaactccgtatacggtctattcatgtgca |
47634795 |
T |
|
| Q |
219 |
gaggcgacgtttcatctcccctctgcaaacaatgtgtggcgaacgcaaaacagagactatcatcacatgcagactgttccttatccaaacgagctgtaat |
318 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| ||||||||| |
|
|
| T |
47634796 |
gaggcgacgtttcatctcccctctgcatacaatgtgtggcgaacgcaacacagagactatcatcagatgcagactgctccttatccaaacaagctgtaat |
47634895 |
T |
|
| Q |
319 |
ctggtacgacgagtgcatggttcgatattccaacacctcttttttctccaccttggctacaagtcctgtctttttcatgatgaacagcctaaatatctca |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | |||||||||||||||||||||||||| || |
|
|
| T |
47634896 |
ctggtacgacgagtgcatggttcgatattccaacacctcttttttctccaccatggctacaaggcctggcgttttcatgatgaacagcctaaatatcaca |
47634995 |
T |
|
| Q |
419 |
agccagga |
426 |
Q |
| |
|
| |||||| |
|
|
| T |
47634996 |
aaccagga |
47635003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 369
Target Start/End: Complemental strand, 20128262 - 20128192
Alignment:
| Q |
299 |
ttatccaaacgagctgtaatctggtacgacgagtgcatggttcgatattccaacacctcttttttctccac |
369 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
20128262 |
ttatccaaacgagctgtcatttggtacgaggagtgcatggttcgatactccaacacctctttcttttccac |
20128192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 369
Target Start/End: Original strand, 22204608 - 22204678
Alignment:
| Q |
299 |
ttatccaaacgagctgtaatctggtacgacgagtgcatggttcgatattccaacacctcttttttctccac |
369 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
22204608 |
ttatccaaacgagctgtcatttggtacgaggagtgcatggttcgatactccaacacctctttcttttccac |
22204678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University