View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_low_19 (Length: 427)
Name: NF14229_low_19
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 44622322 - 44622731
Alignment:
| Q |
1 |
ttgaagaaaactaaatattcttggcaatcgtataatatcctgtgagattggacataaaatacaactgatatcaaacagcaaaaatgacaatcttaggttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44622322 |
ttgaagaaaactaaatattcttggcaatcgtataatatcctgtgagattggacataaaatgcaactgatatcaaacagcaaaaatgacaatcttaggttc |
44622421 |
T |
|
| Q |
101 |
atcacgagctaaaggaatagcgggataaaaaagcagtgttgtcaatcgcatattatgtaaaatagaagcttgttcaaattctgctatgctacaatgatat |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44622422 |
atcacgagctaaaggaatagcggtataaaaaagcagtgttgtcaatcgcatattatgtaaaatagaagcttgttcaaattctgctatgctacaatgctat |
44622521 |
T |
|
| Q |
201 |
agctgctgtttggcaacagtttgtactagatcatattacgcataaataatagcaattttttaatatttcaatacactatagcactatagcgccactattt |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44622522 |
agctgctgtttggtaacagtttgtactagatcatattacgcataaataatagcaattttttaatatttcaatacactaaagcactatagcgccactattt |
44622621 |
T |
|
| Q |
301 |
gacaacactgtnnnnnnntacagttcaaatgtagagtatgtaaaagctaaagctagagtattaccgggtctgcaaaaaggttaaataaaaaaggttgcac |
400 |
Q |
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| T |
44622622 |
gacaacactgt-aaaaaatacagttcaaatgtagagtatgta------aaagctagagtattaccgggtctgcaaaaaggttaaataaaaaaggttgcac |
44622714 |
T |
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| Q |
401 |
atcttctagagtctctg |
417 |
Q |
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| T |
44622715 |
atcttctagagtctctg |
44622731 |
T |
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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 350 - 417
Target Start/End: Original strand, 39877943 - 39878010
Alignment:
| Q |
350 |
aagctagagtattaccgggtctgcaaaaaggttaaataaaaaaggttgcacatcttctagagtctctg |
417 |
Q |
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|
| T |
39877943 |
aagctagagtattactggatcggcaaaaaggttaaataaaaaaggctgcacatcatctagagtctctg |
39878010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 34925253 - 34925343
Alignment:
| Q |
138 |
gttgtcaatcgcatattatgtaaaatagaagcttgttcaaattctgctatgctacaatgatatagctgctgtttggcaacagtttgtacta |
228 |
Q |
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| T |
34925253 |
gttgtcaattgcagatcgtggaaaatagcagtttgttcaaattctgctatgctacaatgctatagccgctatttgacaacattttgtacta |
34925343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 8558804 - 8558849
Alignment:
| Q |
159 |
aaaatagaagcttgttcaaattctgctatgctacaatgatatagct |
204 |
Q |
| |
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||||||| || |||||||||||| |||||||||||||| ||||||| |
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|
| T |
8558804 |
aaaatagtagtttgttcaaattccgctatgctacaatgttatagct |
8558849 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 417
Target Start/End: Original strand, 24035976 - 24036067
Alignment:
| Q |
320 |
acagttcaaatgtagagtatgtaaaagctaaagctagagtattaccgggtctgcaaaaaggttaaataaaaaaggttgcacatcttctagagtctctg |
417 |
Q |
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|||||||||||||||| ||||| ||| |||||||||||||| |||| ||||||||| |||||| |||| || |||||||||||||||||||| |
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| T |
24035976 |
acagttcaaatgtagaatatgt------taatgctagagtattaccaggtcagcaaaaagggtaaatagaaaatatttcacatcttctagagtctctg |
24036067 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 38434252 - 38434183
Alignment:
| Q |
134 |
cagtgttgtcaatcgcatattatgtaaaatagaagcttgttcaaattctgctatgctacaatgatatagc |
203 |
Q |
| |
|
||||||||||||||||| | | | ||||||| || ||||||||||||||||||| |||| || |||||| |
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| T |
38434252 |
cagtgttgtcaatcgcagaacacggaaaatagcagtttgttcaaattctgctatgttacagtgctatagc |
38434183 |
T |
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