View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14229_low_2 (Length: 721)
Name: NF14229_low_2
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 9 - 688
Target Start/End: Complemental strand, 38710814 - 38710144
Alignment:
| Q |
9 |
agagagatgaacaacagtgagtccccaaaatacatgaacttttgcgacagtaccaaagcggctgaagacctcttctacttccttctcactataacaaaag |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38710814 |
agagaaatgaacaacagtgagtccccaaaatacatgaacttttgcgacagtaccaaagcggcttaagacctcttctacttccttctcactataacaaaag |
38710715 |
T |
|
| Q |
109 |
tttatacatctagatattagtaaagcagataattaaattgttgaaattaagaatcattctttcttcgaaaagnnnnnnnnntgcatacgtacgtggttgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38710714 |
tttatacatctagatattagtaaagcagataatt-----gttgaaattaagaatcattctttcttcgaaaagaaaaaaaaatgcatacgtacgtggttgt |
38710620 |
T |
|
| Q |
209 |
aaatggcagattatggacaaaaacagtcaagagtgatnnnnnnnnctctttatgttattttctcctggagttgatgataactggacatcccatcgatcga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38710619 |
aaatggcagattatggacaaaaacagtcgagagtgataaaaaa--ctctt-atgttattttctcctggagttgatgataactggacatcccatcgatcga |
38710523 |
T |
|
| Q |
309 |
catcttcttcggcctctagatccaaaccactatttgcatcaccaaattccaaagtcagctgcttgcgtgataaagaaaataataaagtgcttttggtcca |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38710522 |
catcttcttcggcctctagatccaaaccactatttgcatcaccaaattccaaagtcagctgcttgcgtgataa-gaaaataataaagtgattttggtcca |
38710424 |
T |
|
| Q |
409 |
ttaacttaatttcagataacaatttggtatttcatcnnnnnnnnncatgttattttgatccaaggtttcaaatgtttcctctcggcctttcccatttttt |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38710423 |
ttaacttaatttcagataacaatttggtatttcatctttttttttcatgttattttgatccaaggtttcaaatgtttcctctcggcctttcccatttttt |
38710324 |
T |
|
| Q |
509 |
caagttgtgggaattcataaaaaagggtcaccacattccatatggcaaacatttgacaatctatcaaataattactcaatgagattgtcgttactttcct |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38710323 |
caagttgtgggaattcataaaaaagggtcaccacattccatatggcaaacgtttgacaatctatcaaataattactcaatgagatcgtcgttactttcct |
38710224 |
T |
|
| Q |
609 |
cgttgtcgccatagcatgagatttcttaactggacgtaactactagttttatcgtgaaccagttttatggtgagcctgta |
688 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38710223 |
cgttgtcgccatagcatgagatttcttaactggacgtaactactagttttatcgtgaaccagttttatggcgagcctgta |
38710144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 398 - 436
Target Start/End: Original strand, 684965 - 685003
Alignment:
| Q |
398 |
cttttggtccattaacttaatttcagataacaatttggt |
436 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
684965 |
cttttagtcccttaacttaatttcagataacaatttggt |
685003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 398 - 436
Target Start/End: Complemental strand, 11362082 - 11362044
Alignment:
| Q |
398 |
cttttggtccattaacttaatttcagataacaatttggt |
436 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
11362082 |
cttttcgtcccttaacttaatttcagataacaatttggt |
11362044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 398 - 436
Target Start/End: Original strand, 25061313 - 25061351
Alignment:
| Q |
398 |
cttttggtccattaacttaatttcagataacaatttggt |
436 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
25061313 |
cttttggtcccttaacttaatttcaggtaacaatttggt |
25061351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 398 - 436
Target Start/End: Complemental strand, 32809421 - 32809383
Alignment:
| Q |
398 |
cttttggtccattaacttaatttcagataacaatttggt |
436 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
32809421 |
cttttggtccattaacttaatttcaggtaacagtttggt |
32809383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University