View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14229_low_22 (Length: 401)

Name: NF14229_low_22
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14229_low_22
NF14229_low_22
[»] chr7 (3 HSPs)
chr7 (97-377)||(27984509-27984783)
chr7 (1-61)||(27984378-27984442)
chr7 (223-273)||(2647592-2647642)
[»] scaffold0016 (1 HSPs)
scaffold0016 (155-222)||(102472-102540)
[»] chr1 (3 HSPs)
chr1 (178-214)||(48382467-48382503)
chr1 (157-222)||(35109515-35109581)
chr1 (155-207)||(8281369-8281422)
[»] chr5 (2 HSPs)
chr5 (223-273)||(2630383-2630433)
chr5 (223-273)||(11181727-11181777)
[»] chr4 (2 HSPs)
chr4 (155-216)||(873502-873564)
chr4 (178-222)||(39774283-39774327)
[»] chr8 (1 HSPs)
chr8 (176-216)||(8863608-8863648)
[»] chr6 (1 HSPs)
chr6 (155-210)||(30518118-30518174)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 97 - 377
Target Start/End: Original strand, 27984509 - 27984783
Alignment:
Q  97 ctacacaccgttactgtttatccagttcggtccaataagacatactctctggagaaag-aactctctgattcactatgatagagtgacacaaataggtta 195  Q
    ||||||| || || |||||||||||||| |||||||||||||||||||  |||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  27984509 ctacacatcgatattgtttatccagttcagtccaataagacatactctggggagaaagcaactctctgatccaatatgatagagtgacacaaataggtta 27984608  T
Q  196 caagaaattaacttacaagcttacaaatcacccacactcacgatgaatccttagagaaaacactaaatgaaggtttttagtttttacaaatatttctcat 295  Q
     ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||       |||||||||||||||||||||    
T  27984609 taagaaattaacttacaagcttacaagtcacccacactcacaatgaatccttagagaaaatactaaatgaag-------gtttttacaaatatttctcat 27984701  T
Q  296 cccaatnnnnnnnctctcatcaaagacactcagtcttaaagttccctccttt-agtttccgagtctccctcttgaagctccct 377  Q
    |||||        |||||| ||||||||| ||||| |||||||| ||||||| | |||||||||||| |||||||||||||||    
T  27984702 cccaa-gaaaaaactctcaccaaagacacccagtcctaaagttctctcctttgattttccgagtctctctcttgaagctccct 27984783  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 27984378 - 27984442
Alignment:
Q  1 gtcttaagcaactataacaaca----aacttatatctaagtgtgaagcaataccacaaacatatt 61  Q
    |||||||||||| |||||||||    |||||||||||||||||||||||||| ||||||||||||    
T  27984378 gtcttaagcaacgataacaacaaacaaacttatatctaagtgtgaagcaataacacaaacatatt 27984442  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 2647642 - 2647592
Alignment:
Q  223 tcacccacactcacgatgaatccttagagaaaacactaaatgaaggttttt 273  Q
    |||||||||||| | ||||||||| ||||||||||| |||||||| |||||    
T  2647642 tcacccacactctcaatgaatcctaagagaaaacacaaaatgaagtttttt 2647592  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 102540 - 102472
Alignment:
Q  155 aactctctgattcactatgata-gagtgacacaaataggttacaagaaattaacttacaagcttacaaa 222  Q
    ||||||||||| ||| |||||| |||||| ||||| |||||||||||||||| |||| ||||| |||||    
T  102540 aactctctgatccacaatgataagagtgatacaaagaggttacaagaaattatcttaaaagctcacaaa 102472  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 48382503 - 48382467
Alignment:
Q  178 agtgacacaaataggttacaagaaattaacttacaag 214  Q
    ||||| |||||||||||||||||||||||||||||||    
T  48382503 agtgatacaaataggttacaagaaattaacttacaag 48382467  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 35109581 - 35109515
Alignment:
Q  157 ctctctgattcactatgata-gagtgacacaaataggttacaagaaattaacttacaagcttacaaa 222  Q
    ||||||||| |||||||||| ||  || |||||||||||||||||||||| |||| ||||| |||||    
T  35109581 ctctctgatccactatgataagatagatacaaataggttacaagaaattagcttaaaagctcacaaa 35109515  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 8281369 - 8281422
Alignment:
Q  155 aactctctgattcactatgata-gagtgacacaaataggttacaagaaattaac 207  Q
    ||||||||||| |||||||||| || ||| ||||||| ||||||||||||||||    
T  8281369 aactctctgatccactatgataagaatgatacaaatatgttacaagaaattaac 8281422  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 2630383 - 2630433
Alignment:
Q  223 tcacccacactcacgatgaatccttagagaaaacactaaatgaaggttttt 273  Q
    |||||| ||||||| ||||||||| ||||||||||||||| |||| |||||    
T  2630383 tcaccctcactcacaatgaatcctaagagaaaacactaaaggaagcttttt 2630433  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 11181777 - 11181727
Alignment:
Q  223 tcacccacactcacgatgaatccttagagaaaacactaaatgaaggttttt 273  Q
    |||||||||||||| ||||||||| ||||||||||| ||| |||| |||||    
T  11181777 tcacccacactcacaatgaatcctaagagaaaacacaaaaggaagcttttt 11181727  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 873564 - 873502
Alignment:
Q  155 aactctctgattcactatgat-agagtgacacaaataggttacaagaaattaacttacaagct 216  Q
    ||||||| ||| ||||||||| ||| ||| || |||||||||||||||||||||||| |||||    
T  873564 aactctccgatccactatgattagaatgataccaataggttacaagaaattaacttaaaagct 873502  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 39774327 - 39774283
Alignment:
Q  178 agtgacacaaataggttacaagaaattaacttacaagcttacaaa 222  Q
    ||||| |||||||||||||||||||||| |||| ||||| |||||    
T  39774327 agtgatacaaataggttacaagaaattagcttaaaagctcacaaa 39774283  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 8863648 - 8863608
Alignment:
Q  176 agagtgacacaaataggttacaagaaattaacttacaagct 216  Q
    ||||||| ||||| ||||||||||||||||||||| |||||    
T  8863648 agagtgatacaaagaggttacaagaaattaacttaaaagct 8863608  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 30518174 - 30518118
Alignment:
Q  155 aactctctgattcactatgat-agagtgacacaaataggttacaagaaattaactta 210  Q
    ||||||||||| ||||||||| ||||||| ||||| |||||||| |||| |||||||    
T  30518174 aactctctgatccactatgataagagtgatacaaagaggttacatgaaactaactta 30518118  T

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