View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_low_24 (Length: 383)
Name: NF14229_low_24
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 40834391 - 40834027
Alignment:
| Q |
1 |
tcatcataatccattaccatttctcaagaaactaataaatagcattctttcaccaattttgttctctcaacaaaaagaa--gagaggnnnnnnntagtat |
98 |
Q |
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| T |
40834391 |
tcatcataatccattaccatttctcaagaaactaataaatagcattctttcaccaattttgttctctcaacaaaaagaaaggagaggaaaaaaatagtat |
40834292 |
T |
|
| Q |
99 |
tcaacatcatgcatgttgcacatcttttgtttggcatatttggtaggttaattaatttattatcatttttactcttacttttaccttgttgtataannnn |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40834291 |
tcaacatcatgcatgttgcacatcttttgtttggcatatttggtaggttaattaatttattatcatttttactcttacttttaccttgttgtataatttt |
40834192 |
T |
|
| Q |
199 |
nnnctt-ctgattctcacagtttgttctttgttggttcagggaatgcttctgctttgttcctcttcttggcacctgtgtatgttttacttagctgctttc |
297 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40834191 |
tttttttctgattctcacagtttgttctttgttggttcagggaatgcttctgctttgttcctcttcttggcacctgtgtatgttttacttagctgctttc |
40834092 |
T |
|
| Q |
298 |
ttctctatgttttctctctgttaagttaaccacggacacttctaattaagacgtgtctattgtctaatat |
367 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
40834091 |
ttctctatgttttctctctg-----ttaaccacggacacttctaactaagacgtgtctagtgtctaatat |
40834027 |
T |
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