View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14229_low_26 (Length: 376)

Name: NF14229_low_26
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14229_low_26
NF14229_low_26
[»] chr1 (4 HSPs)
chr1 (59-361)||(40399604-40399905)
chr1 (188-285)||(44188383-44188480)
chr1 (179-226)||(22536086-22536133)
chr1 (209-261)||(344309-344361)
[»] chr2 (1 HSPs)
chr2 (173-270)||(13280310-13280407)
[»] chr8 (7 HSPs)
chr8 (176-271)||(27183123-27183218)
chr8 (176-270)||(27231068-27231162)
chr8 (197-253)||(18140245-18140301)
chr8 (182-240)||(24465554-24465612)
chr8 (186-253)||(12724027-12724094)
chr8 (92-126)||(13473848-13473882)
chr8 (195-253)||(18095604-18095662)
[»] chr5 (2 HSPs)
chr5 (182-285)||(9763536-9763639)
chr5 (196-255)||(42261539-42261598)
[»] scaffold0129 (1 HSPs)
scaffold0129 (187-263)||(9622-9698)
[»] chr4 (1 HSPs)
chr4 (196-258)||(4876024-4876086)
[»] chr3 (1 HSPs)
chr3 (180-234)||(15861804-15861858)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 59 - 361
Target Start/End: Complemental strand, 40399905 - 40399604
Alignment:
Q  59 tgcagagacaccattcgcgtcaccttgcagaactccttccatggctccaacatttgagaaggtgagtaataacttatatacccccatgacatttccttgt 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40399905 tgcagagacaccattcgcgtcaccttgcagaactccttccatggctccaacatttgagaaggtgagtaataacttatatacccc-atgacatttccttgt 40399807  T
Q  159 ctattctctctaaacttaagcgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcat 258  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40399806 ctattctctttaaacttaagcgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcat 40399707  T
Q  259 ttccaaatctcattcactctacgatgaaaatgacgcgtgtctccttctaagcgcttgcgactatcattgcaatttgtattttactttctgattctgatga 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  40399706 ttccaaatctcattcactctacgatgaaaatgacgcgtgtctccttctaagcgcttacgaatatcattgcaatttgtattttactttctgattctgatga 40399607  T
Q  359 tag 361  Q
    |||    
T  40399606 tag 40399604  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 285
Target Start/End: Complemental strand, 44188480 - 44188383
Alignment:
Q  188 tgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttccaaatctcattcactctacgatga 285  Q
    ||||||| |||||||||| |  | ||| | ||||||||||||||| | || |||| |||| ||||| ||||||||||||||||| ||||||| |||||    
T  44188480 tgtgttcgcaaatcatggtcattgttacttgaaaaccctaatttcttcaaaatgttccgcgacaatctcatttccaaatctcatccactctatgatga 44188383  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 22536133 - 22536086
Alignment:
Q  179 cgattttcttgtgttcacaaatcatggactcttttattcgaaaaccct 226  Q
    |||||| |||| ||||| ||||||||| ||||||||||||||||||||    
T  22536133 cgatttacttgcgttcaaaaatcatggtctcttttattcgaaaaccct 22536086  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 344309 - 344361
Alignment:
Q  209 cttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttc 261  Q
    |||||||| |||||||||||||| |||||||||||  | |||||| |||||||    
T  344309 cttttatttgaaaaccctaattttatgaacatgtattgtaacaatttcatttc 344361  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 13280310 - 13280407
Alignment:
Q  173 cttaagcgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttccaaatctca 270  Q
    ||||| || ||| ||||||||| |||||||||| ||| |||||| |||||||||| |||||||||||||| |||||||||| |  |||||||||||||    
T  13280310 cttaaacgctttgcttgtgttcgcaaatcatggtctcatttatttgaaaaccctattttcatgaacatgttccgcaacaatcttgtttccaaatctca 13280407  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 27183123 - 27183218
Alignment:
Q  176 aagcgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttccaaatctcat 271  Q
    ||||||||| ||||||||  |||||||||| ||||||||||  |||||||||||||||| ||| ||| |||||||||| |  ||||||||||||||    
T  27183123 aagcgatttacttgtgtttccaaatcatggtctcttttatttcaaaaccctaatttcatcaacttgttccgcaacaatcttgtttccaaatctcat 27183218  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 270
Target Start/End: Complemental strand, 27231162 - 27231068
Alignment:
Q  176 aagcgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttccaaatctca 270  Q
    ||||||||| ||||||||  |||||||||| ||||||||||  |||||||||||||||| ||| ||| |||||||||| |  |||||||||||||    
T  27231162 aagcgatttacttgtgtttccaaatcatggtctcttttatttcaaaaccctaatttcatcaacttgttccgcaacaatcttgtttccaaatctca 27231068  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 18140301 - 18140245
Alignment:
Q  197 aaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaat 253  Q
    ||||||||| | ||||||||| |||||||||||||||||||||||| ||||| ||||    
T  18140301 aaatcatggtcacttttattccaaaaccctaatttcatgaacatgttccgcaccaat 18140245  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 24465554 - 24465612
Alignment:
Q  182 ttttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacat 240  Q
    ||||||||||||| |||||||||||||| | |||| ||||||| ||||||||| |||||    
T  24465554 ttttcttgtgttcgcaaatcatggactcgtctattagaaaaccataatttcatcaacat 24465612  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 12724027 - 12724094
Alignment:
Q  186 cttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaat 253  Q
    |||||| ||| ||||||||| ||||||| ||| ||||| ||| |||||||||||||| ||||| ||||    
T  12724027 cttgtgctcaaaaatcatggtctcttttgttccaaaactctattttcatgaacatgttccgcaccaat 12724094  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 13473882 - 13473848
Alignment:
Q  92 tccttccatggctccaacatttgagaaggtgagta 126  Q
    |||||| ||||||||||||||||||||||||||||    
T  13473882 tccttctatggctccaacatttgagaaggtgagta 13473848  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 18095604 - 18095662
Alignment:
Q  195 acaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaat 253  Q
    ||||||||||| | ||| | ||| |||||||||||||||||||||||| ||||| ||||    
T  18095604 acaaatcatggtcacttcttttccaaaaccctaatttcatgaacatgttccgcaccaat 18095662  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 285
Target Start/End: Original strand, 9763536 - 9763639
Alignment:
Q  182 ttttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttccaaatctcattcactctacg 281  Q
    ||||||||||||| |||||||||| ||||||| || |||||||||| ||| ||||||||||  |||| |||| |||| | |||||||||| ||||||| |    
T  9763536 ttttcttgtgttcgcaaatcatggtctcttttgtttgaaaaccctatttttatgaacatgtttcgcaccaatctcatattcaaatctcatccactctatg 9763635  T
Q  282 atga 285  Q
    ||||    
T  9763636 atga 9763639  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 42261539 - 42261598
Alignment:
Q  196 caaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatat 255  Q
    |||||||||| |||| |||||||||||||| |||||||| || |||||| ||||||||||    
T  42261539 caaatcatggtctctcttattcgaaaaccccaatttcattaagatgtactgcaacaatat 42261598  T

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Target: scaffold0129 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 9622 - 9698
Alignment:
Q  187 ttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttcca 263  Q
    |||||| || ||||||||| |||  ||||| |||||||||||||||||||||||||| || |||||| |||| ||||    
T  9622 ttgtgtacataaatcatggtctcgcttatttgaaaaccctaatttcatgaacatgtatcgtaacaatgtcatatcca 9698  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 4876024 - 4876086
Alignment:
Q  196 caaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcat 258  Q
    |||||||| | ||||||||||  |||||||||||||||||||||||| ||||| |||| ||||    
T  4876024 caaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcaccaatttcat 4876086  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 15861858 - 15861804
Alignment:
Q  180 gattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcat 234  Q
    |||||||||| | || ||||| |||| |||||||||| |||||||||||||||||    
T  15861858 gattttcttgcgctcgcaaattatggtctcttttatttgaaaaccctaatttcat 15861804  T

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