View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_low_27 (Length: 361)
Name: NF14229_low_27
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 22 - 309
Target Start/End: Complemental strand, 394231 - 393944
Alignment:
| Q |
22 |
tatattttaaaggatatcatgttcattcaaaatacataaacaaaattgatgttgtcttgcaaagaactattgtcaagccaacactttgatgttaacgacc |
121 |
Q |
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| T |
394231 |
tatattttaaaggatatcatgttcattcaaaatacataaacaaaattgatattgtcttgcaaagaactattgtcagaccaacactttgatgttaacgact |
394132 |
T |
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| Q |
122 |
acttcatacgacaatataatcatcatcatatcctctgaagaagacaaatgactcattgataatgacaaaatgaagataaacaaatgtgaaaacaccatta |
221 |
Q |
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| T |
394131 |
acttcatacgacaatataatcatcatcatatcctgtgaagaagacaaatgactcattgataatgataaaatgaagataaacaaatgtgaaaacaccatta |
394032 |
T |
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| Q |
222 |
gattagacgagaaataatgtaatagagatcattacaaccatgtaaagaaataaataataataacaaacatcaaattgcaaaacccttt |
309 |
Q |
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| T |
394031 |
gattagacgagaaataatataatagagatcaatagaaccatgtaaagaaataaataataataacaaacatcaaattgcaaaacccttt |
393944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 50 - 304
Target Start/End: Complemental strand, 20537661 - 20537411
Alignment:
| Q |
50 |
aaaatacataaacaaaattgatgttgtcttgcaaagaactattgtcaagccaacactttgatgttaacgaccacttcatacgacaatataatcatcatca |
149 |
Q |
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| T |
20537661 |
aaaatgcataaataaaatcgatgttgtcttgcaaagaaccattgttaggccaacactttgatgttactcaccacttcaaacaacaatataatcaccttca |
20537562 |
T |
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| Q |
150 |
tatcctctgaagaagacaaatgactcattgataatgacaaaatgaagataaacaaatgtgaaaacaccattagattagacgagaaataatgtaatagaga |
249 |
Q |
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| T |
20537561 |
ta-cctatgaagaagacaaatgactcattgataatggaaaaatgaagaaaaacaaatgtgaaaacaccattagattagaggacaaataaaataatagaga |
20537463 |
T |
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| Q |
250 |
tcattacaaccatgtaaagaaataaataataataacaaacatcaaattgcaaaac |
304 |
Q |
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| T |
20537462 |
tcgataaaaccatgtacagaaat---caatagtaacaaatatcaaattacaaaac |
20537411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 61 - 238
Target Start/End: Complemental strand, 10459210 - 10459034
Alignment:
| Q |
61 |
acaaaattgatgttgtcttgcaaagaactattgtcaagccaacactttgatgttaacgaccacttcatacgacaatataatcatcatcatatcctctgaa |
160 |
Q |
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||||||| |||| ||||||||||||||| ||| ||| ||| || ||||||||||| | |||||||||||| ||| |||||||| ||| | | ||| |||| |
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| T |
10459210 |
acaaaatcgatgatgtcttgcaaagaaccattatca-gcccacgctttgatgttatccaccacttcatacaacactataatcaccattaaaccctgtgaa |
10459112 |
T |
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| Q |
161 |
gaagacaaatgactcattgataatgacaaaatgaagataaacaaatgtgaaaacaccattagattagacgagaaataa |
238 |
Q |
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|||||||||||||||||| |||||| |||||||||| ||||||||||| || || ||||||||||| ||||||||| |
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| T |
10459111 |
gaagacaaatgactcattaataatggaaaaatgaagaaaaacaaatgtggaagcattattagattagaggagaaataa |
10459034 |
T |
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