View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_low_3 (Length: 665)
Name: NF14229_low_3
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 209 - 648
Target Start/End: Original strand, 40155902 - 40156338
Alignment:
| Q |
209 |
aagaagagtgttaaaaacactatcttttcaacattcactctgacattcattcttttattaaataacattttaacgaataaaagaacgagtgtaagaagnn |
308 |
Q |
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| T |
40155902 |
aagaagagtgttaaaaacactatcttttcaatattcattctgacattcattcttttattaaataacattttaacgaataaaagaacgagtgtgagaa--- |
40155998 |
T |
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| Q |
309 |
nnnnnntctaacatttttcttgtttcaatgataaaaattatgcaacctctgatgcagccgccagccacgtttaaatatatttgtaatttcatgaaagatt |
408 |
Q |
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| T |
40155999 |
aaaaaatccaacatttttcttgtttcaatgataaaaattatgcaaactctaatgcagccgccagccacgtttaaatatttttgtaatttcatgaaagatt |
40156098 |
T |
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| Q |
409 |
tctttatttcaattctatggtatctcaacaaagttacttcattctcnnnnnnnnnnnnnnnnntactttatcaaaatttatatctcgctcaatttgtcat |
508 |
Q |
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| T |
40156099 |
tttttatttcaattctatggtatctcaacaaagttacttcattctcaaaaaaaaaaaaaaaattacttcatcaaaatttatatctcgctcaatttgtcat |
40156198 |
T |
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| Q |
509 |
cacgggttttttccaatggatagaaaaataaagaacaaactcattttactacaaaattctgttggatacctcattagagaatggagatactctaaggcat |
608 |
Q |
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| T |
40156199 |
cacgggttttttccaatggattgaaaaataaagaacaaactcattttactacaaaattctgcgggatacctcattagagaatggagatactctaaggtat |
40156298 |
T |
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| Q |
609 |
acttaaaaagttaaatacatcaatggacacttgtttgttt |
648 |
Q |
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| T |
40156299 |
acttaaaaaattaaatacatcaatggacacttgtttgttt |
40156338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 33 - 195
Target Start/End: Original strand, 40155749 - 40155911
Alignment:
| Q |
33 |
tggacttttagaggaacatctttatgtcaaaatacacagttgtcatctgcaatgatgtgctaattggtgaagaaaactataagcattgatagtgtaattc |
132 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40155749 |
tggacttttagaagaacatctttatatcaaaatacacagttgtcatctgcaatgatgtgctaattggtgaagaaaactataagcattgatagtgcaattc |
40155848 |
T |
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| Q |
133 |
ttggaagaatgcaaattcttcggccacgtgtcattactatcatccttcaaaataagaagagtg |
195 |
Q |
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| T |
40155849 |
ttcgaagaatgcaaattcttcggccacacgtcattagtatcatccttcaagataagaagagtg |
40155911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 30658728 - 30658679
Alignment:
| Q |
35 |
gacttttagaggaacatctttatgtcaaaatacacagttgtcatctgcaa |
84 |
Q |
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| T |
30658728 |
gactttcaaaggaacatctttatgtcaaaatacatggttgtcatctgcaa |
30658679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 30063905 - 30063946
Alignment:
| Q |
47 |
aacatctttatgtcaaaatacacagttgtcatctgcaatgat |
88 |
Q |
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| T |
30063905 |
aacatctttatgtcaaagtacacggttctcatctgcaatgat |
30063946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 29298486 - 29298530
Alignment:
| Q |
44 |
aggaacatctttatgtcaaaatacacagttgtcatctgcaatgat |
88 |
Q |
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| T |
29298486 |
aggaacatctttatgccaaaatacaaggctgtcatctgcaatgat |
29298530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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