View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14229_low_35 (Length: 303)

Name: NF14229_low_35
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14229_low_35
NF14229_low_35
[»] chr8 (3 HSPs)
chr8 (1-287)||(24406365-24406651)
chr8 (8-277)||(24412565-24412834)
chr8 (92-219)||(24817201-24817325)
[»] chr5 (4 HSPs)
chr5 (2-148)||(8981840-8981986)
chr5 (2-144)||(8991345-8991487)
chr5 (92-198)||(35390499-35390602)
chr5 (80-144)||(36686934-36686998)
[»] chr4 (7 HSPs)
chr4 (103-288)||(11931878-11932060)
chr4 (80-150)||(11160630-11160700)
chr4 (84-150)||(52791998-52792064)
chr4 (99-148)||(6948205-6948254)
chr4 (99-144)||(11174670-11174715)
chr4 (99-144)||(11182132-11182177)
chr4 (89-129)||(11192564-11192604)
[»] chr7 (7 HSPs)
chr7 (27-287)||(6778434-6778691)
chr7 (233-287)||(37466432-37466486)
chr7 (27-64)||(37476447-37476484)
chr7 (27-64)||(37540426-37540463)
chr7 (38-147)||(37580623-37580732)
chr7 (27-65)||(37466657-37466695)
chr7 (27-64)||(37480969-37481006)


Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 24406651 - 24406365
Alignment:
Q  1 tgaggtcgaagaagctgttgctttgaaatcgcagaccatcaagcacatgatcgaggacgattgtgtcaaaaccgaaattcctcttccaaacgtaaccagc 100  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24406651 tgaggtcgaagaagctgttgctttgaaatcgcagacgatcaaacacatgatcgaggacgattgtgccaaaaccgaaattcctcttccaaacgtaaccagc 24406552  T
Q  101 aagatcttggcaaaggttatcgagtattgtaataagcatgttgaggctacgacaagttccgaaggaaaaccctccgaggatgatgttaaggcttgggacg 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24406551 aagatcttggcaaaggttatcgagtattgtaagaagcatgttgaggctacaacaagttccgaaggaaaaccctccgaggatgatgttaaggcttgggacg 24406452  T
Q  201 ctgagttcgtcaaggttgacctgagcacacgctttgaactcatcttggctgcaaactacttggatatcaagagcctactggaactta 287  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24406451 ctgagttcgtcaaggttgatctgaatacacgctttgaactcatcttggctgcaaactacttggatatcaagagcctactggaactta 24406365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 277
Target Start/End: Original strand, 24412565 - 24412834
Alignment:
Q  8 gaagaagctgttgctttgaaatcgcagaccatcaagcacatgatcgaggacgattgtgtcaaaaccgaaattcctcttccaaacgtaaccagcaagatct 107  Q
    ||||| |||||||| |||||||||||||| ||||| ||||||||||||| ||||| || |||||||||||| ||||||||||||||||||||||||||||    
T  24412565 gaagaggctgttgcgttgaaatcgcagacgatcaaacacatgatcgaggtcgattttgccaaaaccgaaat-cctcttccaaacgtaaccagcaagatct 24412663  T
Q  108 tggcaaaggttatcgagtattgtaataagcatgttgaggctacgacaagttccgaaggaaaaccctccgaggatgatgttaaggcttgggacgctgagtt 207  Q
    || |||||||||||||||||||||| ||||||||||||||||| || |||||| ||| ||||||||| ||||||||||||||||||||||||||||||||    
T  24412664 tgacaaaggttatcgagtattgtaagaagcatgttgaggctaccacgagttccaaagaaaaaccctctgaggatgatgttaaggcttgggacgctgagtt 24412763  T
Q  208 cgtcaaggttgacctgagcacacg-ctttgaactcatcttggctgcaaactacttggatatcaagagccta 277  Q
    | ||||||||||||||   | | | ||  |||||| | |||||||||||| ||||||||||||||||||||    
T  24412764 catcaaggttgacctggctatatgcctcggaactcctgttggctgcaaacgacttggatatcaagagccta 24412834  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 24817201 - 24817325
Alignment:
Q  92 gtaaccagcaagatcttggcaaaggttatcgagtattgtaataagcatgttgaggctacgacaagttccgaaggaaaaccctccgaggatgatgttaagg 191  Q
    |||||||| || |||||||| || ||||| |||||||| || |||||||||||||||   ||||||||||||| |||||| || ||||||| | |||| |    
T  24817201 gtaaccagaaacatcttggcgaaagttattgagtattgcaagaagcatgttgaggct---acaagttccgaagaaaaaccttctgaggatgctcttaatg 24817297  T
Q  192 cttgggacgctgagttcgtcaaggttga 219  Q
    |||||||  |||| ||  ||||||||||    
T  24817298 cttgggatactgaatttctcaaggttga 24817325  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 8981840 - 8981986
Alignment:
Q  2 gaggtcgaagaagctgttgctttgaaatcgcagaccatcaagcacatgatcgaggacgattgtgtcaaaaccgaaattcctcttccaaacgtaaccagca 101  Q
    |||||||| ||||||||||||||| |||| ||||| |||||||| |||||||| || ||||| |   | |  | ||| |||||||| ||||| ||||| |    
T  8981840 gaggtcgatgaagctgttgctttggaatctcagacgatcaagcatatgatcgaagatgattgcgctgacagtggaatccctcttcccaacgttaccagta 8981939  T
Q  102 agatcttggcaaaggttatcgagtattgtaataagcatgttgaggct 148  Q
    |||||||||| ||||| || |||||||| || |||||||||||||||    
T  8981940 agatcttggcgaaggtgattgagtattgcaagaagcatgttgaggct 8981986  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 144
Target Start/End: Original strand, 8991345 - 8991487
Alignment:
Q  2 gaggtcgaagaagctgttgctttgaaatcgcagaccatcaagcacatgatcgaggacgattgtgtcaaaaccgaaattcctcttccaaacgtaaccagca 101  Q
    |||||||| ||||| || |||||| |||| ||||| |||||||| |||||||| || ||||| |   | |  | ||| |||||||| ||||| |||||||    
T  8991345 gaggtcgatgaagcggtggctttggaatctcagacgatcaagcatatgatcgaagatgattgcgctgacagtggaatccctcttcccaacgttaccagca 8991444  T
Q  102 agatcttggcaaaggttatcgagtattgtaataagcatgttga 144  Q
    |||||||||| ||||| || |||||||| || |||||||||||    
T  8991445 agatcttggcgaaggtgattgagtattgcaagaagcatgttga 8991487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 35390602 - 35390499
Alignment:
Q  92 gtaaccagcaagatcttggcaaaggttatcgagtattgtaataagcatgttgaggctacgacaagttccgaaggaaaaccctccgaggatgatgttaagg 191  Q
    ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||||||||   |   |||||||||| ||||||||   | |||||| ||||||    
T  35390602 gtaactagcaacatcttggcgaaggttattgagtattgtaaaaagcatgttgaggccggg---agttccgaagaaaaacccttacatgatgatcttaagg 35390506  T
Q  192 cttggga 198  Q
    |||||||    
T  35390505 cttggga 35390499  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 36686998 - 36686934
Alignment:
Q  80 cctcttccaaacgtaaccagcaagatcttggcaaaggttatcgagtattgtaataagcatgttga 144  Q
    |||||| |||| ||||| ||||| ||||||||||||||||| || |||||||| |||||||||||    
T  36686998 cctctttcaaatgtaactagcaacatcttggcaaaggttattgaatattgtaaaaagcatgttga 36686934  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 288
Target Start/End: Complemental strand, 11932060 - 11931878
Alignment:
Q  103 gatcttggcaaaggttatcgagtattgtaataagcatgttgaggctacgacaagttccgaaggaaaaccctccgaggatgatgttaaggcttgggacgct 202  Q
    ||||||||| |||||||| |||||||| || |||||||||||||||  |   |||||||| ||||| ||||||||||||||  | |||   ||||| |||    
T  11932060 gatcttggcgaaggttattgagtattgcaagaagcatgttgaggctgag---agttccgatggaaagccctccgaggatgaattgaagaaatgggatgct 11931964  T
Q  203 gagttcgtcaaggttgacctgagcacacgctttgaactcatcttggctgcaaactacttggatatcaagagcctactggaacttat 288  Q
    || ||||||||||||||   |   |||| |||||| || |||| |||||| ||||| || || |||||||| ||| |||| |||||    
T  11931963 gaattcgtcaaggttgataagcctacactctttgatcttatctcggctgccaactatttagacatcaagagtctattggatcttat 11931878  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 11160630 - 11160700
Alignment:
Q  80 cctcttccaaacgtaaccagcaagatcttggcaaaggttatcgagtattgtaataagcatgttgaggctac 150  Q
    |||||||||||||| ||| ||||||||||||| | |||||| ||| |||| || ||||||||||| |||||    
T  11160630 cctcttccaaacgttaccggcaagatcttggctatggttattgagcattgcaagaagcatgttgacgctac 11160700  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 52792064 - 52791998
Alignment:
Q  84 ttccaaacgtaaccagcaagatcttggcaaaggttatcgagtattgtaataagcatgttgaggctac 150  Q
    |||| |||| ||| |||||||||||| | |||||||| ||||||||||| ||||| ||||| |||||    
T  52792064 ttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctac 52791998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 6948254 - 6948205
Alignment:
Q  99 gcaagatcttggcaaaggttatcgagtattgtaataagcatgttgaggct 148  Q
    ||||| ||||||| |||||||| |||||||| || |||||||||||||||    
T  6948254 gcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggct 6948205  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 11174670 - 11174715
Alignment:
Q  99 gcaagatcttggcaaaggttatcgagtattgtaataagcatgttga 144  Q
    ||||||||||||| ||||||||||||||||| || || ||||||||    
T  11174670 gcaagatcttggctaaggttatcgagtattgcaagaaacatgttga 11174715  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 11182132 - 11182177
Alignment:
Q  99 gcaagatcttggcaaaggttatcgagtattgtaataagcatgttga 144  Q
    ||||||||||||| ||||||||||||||||| || || ||||||||    
T  11182132 gcaagatcttggctaaggttatcgagtattgcaagaaacatgttga 11182177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 11192604 - 11192564
Alignment:
Q  89 aacgtaaccagcaagatcttggcaaaggttatcgagtattg 129  Q
    ||||||||||||||||||||||| | |||||| ||||||||    
T  11192604 aacgtaaccagcaagatcttggccatggttattgagtattg 11192564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 287
Target Start/End: Original strand, 6778434 - 6778691
Alignment:
Q  27 aatcgcagaccatcaagcacatgatcgaggacgattgtgtcaaaaccgaaattcctcttccaaacgtaaccagcaagatcttggcaaaggttatcgagta 126  Q
    |||||||||| |||||||||||||||||||||||||||  | | | || ||| ||  |||| ||||| ||| |  |||| ||||| ||||| || || ||    
T  6778434 aatcgcagacgatcaagcacatgatcgaggacgattgtaccgacaacggaatcccagttcctaacgtgaccggtcagatattggcgaaggtgattgaata 6778533  T
Q  127 ttgtaataagcatgttgaggctacgacaagttccgaaggaaaaccctccgaggatgatgttaaggcttgggacgctgagttcgtcaaggttgacctgagc 226  Q
     ||||| ||||||||||| ||  ||   |||||||| | |||||| || || |||||| |||||  |||||| ||||| ||||| |||||||| | |       
T  6778534 ctgtaagaagcatgttgatgccgcg---agttccgatgaaaaaccttcagaagatgatcttaagaattgggatgctgaattcgtgaaggttgatcaggat 6778630  T
Q  227 acacgctttgaactcatcttggctgcaaactacttggatatcaagagcctactggaactta 287  Q
    ||||  || || |||||  | |||||||| |||||| |||||||||| |||||||| ||||    
T  6778631 acacttttcgatctcattcttgctgcaaattacttgaatatcaagagtctactggatctta 6778691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 37466486 - 37466432
Alignment:
Q  233 tttgaactcatcttggctgcaaactacttggatatcaagagcctactggaactta 287  Q
    |||||||||||| | |||||||||||||||||||||||||| |||||||| ||||    
T  37466486 tttgaactcatccttgctgcaaactacttggatatcaagagtctactggatctta 37466432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 37476484 - 37476447
Alignment:
Q  27 aatcgcagaccatcaagcacatgatcgaggacgattgt 64  Q
    |||||||||| |||||||||||||||||||||||||||    
T  37476484 aatcgcagacgatcaagcacatgatcgaggacgattgt 37476447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 37540426 - 37540463
Alignment:
Q  27 aatcgcagaccatcaagcacatgatcgaggacgattgt 64  Q
    |||||||||| |||||||||||||||||||||||||||    
T  37540426 aatcgcagacgatcaagcacatgatcgaggacgattgt 37540463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 37580623 - 37580732
Alignment:
Q  38 atcaagcacatgatcgaggacgattgtgtcaaaaccgaaattcctcttccaaacgtaaccagcaagatcttggcaaaggttatcgagtattgtaataagc 137  Q
    |||||||| |||||||||||  |||||| | |||  | |||  || |||||||||| | |||||||||| ||||||||||||| || || ||||| ||||    
T  37580623 atcaagcatatgatcgaggaaaattgtgccgaaaatgtaatcactattccaaacgtcaacagcaagatcctggcaaaggttattgaatactgtaagaagc 37580722  T
Q  138 atgttgaggc 147  Q
    |||| |||||    
T  37580723 atgtggaggc 37580732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 37466695 - 37466657
Alignment:
Q  27 aatcgcagaccatcaagcacatgatcgaggacgattgtg 65  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  37466695 aatcacagacaatcaagcacatgatcgaggacgattgtg 37466657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 37481006 - 37480969
Alignment:
Q  27 aatcgcagaccatcaagcacatgatcgaggacgattgt 64  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  37481006 aatcgcagacgatcaagtacatgatcgaggacgattgt 37480969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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