View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_low_37 (Length: 279)
Name: NF14229_low_37
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 135 - 269
Target Start/End: Complemental strand, 29828550 - 29828412
Alignment:
| Q |
135 |
aatcagcgtacgtaatctatgttagtttaataaatatataggtgatttgataatgatttcatttttagct----tagccctgaatttgtattttcttctt |
230 |
Q |
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| T |
29828550 |
aatcagcgtacgtaatctatgttagtttaataaatatataagtgatttgataataatttcatttttagcttaggtagccctgaatttgtattttcttctt |
29828451 |
T |
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| Q |
231 |
tttataaggaaagatttctggttctctaatctccctttg |
269 |
Q |
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| T |
29828450 |
tttataaggaaagatttctggttctctaatctctctttg |
29828412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 29828661 - 29828575
Alignment:
| Q |
20 |
ttactgatgtggaggaatatgttgtgtggttatgggcatcaagtttccaaggttcttattttcattcagttgtaatctgtatgttag |
106 |
Q |
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| T |
29828661 |
ttactgatgtggaggaatatgttgtgtggttatgggcatcaagtttccaaggttcttattttcattcagttgtaatctgtatgttag |
29828575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 13117850 - 13117733
Alignment:
| Q |
147 |
taatctatgttagtttaataaatatataggtgatttgataatgatttcatttttagct----tagccctgaatttgtattttcttctttttataaggaaa |
242 |
Q |
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| T |
13117850 |
taatctatgtcacttaaataaatataaaa-tgatttgctaatgatttcatttttagcttaggtagcactgaatttttattttcttcttttgccaaggaaa |
13117752 |
T |
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| Q |
243 |
gatttctggttctctaatc |
261 |
Q |
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| T |
13117751 |
gatttatagtcctctaatc |
13117733 |
T |
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