View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_low_38 (Length: 260)
Name: NF14229_low_38
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 5396140 - 5395881
Alignment:
| Q |
1 |
atagacagtacattaacnnnnnnntcaaacacaaattcaacaaacaccacatacaactttttcctcaaaaagacggttaatataacaacaaatgnnnnnn |
100 |
Q |
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| T |
5396140 |
atagacagtacattaacaaaaaaatcaaacacaaattcaaaaaacaccacatacaactttttcctcaaaaagacggttaatataacaacaaatgaaaaaa |
5396041 |
T |
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| Q |
101 |
nnnnnntgtaccctttaaaacacatataacaactaaaaaaggaaataagggtaacaacttatcatttctacacgaaatcaagacatttaaagagtttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5396040 |
aaaaa-tgtaccctttaaaacacatataacaactaaaaaaggaaataagggtaacaacttatcatttctacacgaaatcaagacatttgaagagtttcaa |
5395942 |
T |
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| Q |
201 |
cacgaata----catggaagaaaa-agactcgtcgttggagtaatagtaccaatgcatctc |
256 |
Q |
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|||||||| |||||||||||| ||||| || ||||||||| ||||||| |||||||| |
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| T |
5395941 |
cacgaatacatgcatggaagaaaagagacttgtagttggagtagtagtaccggtgcatctc |
5395881 |
T |
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