View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_low_39 (Length: 255)
Name: NF14229_low_39
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 1541540 - 1541314
Alignment:
| Q |
1 |
acaagttcattctattcagtttagtggtctagaggattctctaaaaattcccgcacaacttttaatattgtttggatttgtgcactattcattattttga |
100 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | || |||| ||||||||||||||||||| |
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| T |
1541540 |
acaagttcattctattcaatttagtgggatagaggattctctaaaaattcccgcacaacttttaatattctctgaatttcggcactattcattattttga |
1541441 |
T |
|
| Q |
101 |
aggaccacaatgagagaatttttaacaacaggacatcgactcttttttccctattgaaaaagttaaaaattcaagtcttctggtggttaaaatcaaatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
1541440 |
aggaccacaatgagagaatttttaacaacaggacatcgactcttttttccctattgaaaaagttaaaaattcaaatcttctaatggttaaaatcaaatta |
1541341 |
T |
|
| Q |
201 |
caatttgttttgattttgactacccta |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
1541340 |
caatttgttttgattttgactacccta |
1541314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 35120653 - 35120874
Alignment:
| Q |
7 |
tcattctattcagtttagtggtctag-aggattctctaaaaattcccgcacaacttttaatattgtttggatttgtgcactattcattattttgaaggac |
105 |
Q |
| |
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|||||||||||||||| ||||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||| | ||| ||||||||||||||||| |
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| T |
35120653 |
tcattctattcagtttggtggtctaggaggattctctaaaaaatcccacacaacttttaatattgtttcgatttcggtactcttcattattttgaaggaa |
35120752 |
T |
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| Q |
106 |
cacaatgagagaatttttaacaacaggacatcgactcttttttccctattgaaaaagttaaaaattcaagtcttctggtggttaaaatcaaa-ttacaat |
204 |
Q |
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|||||| |||| ||||||||||||| ||| || ||||||| | |||| ||| | ||||| | |||| |||||||||||||||||||| ||||| | |
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| T |
35120753 |
cacaataagaggatttttaacaacatgacttcttctcttttagctttattagaaatggtaaaattccaagctttctggtggttaaaatcaaacttacatt |
35120852 |
T |
|
| Q |
205 |
ttgttttgattttgactacccta |
227 |
Q |
| |
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||| ||||||||||| ||||||| |
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| T |
35120853 |
ttg-tttgattttgattacccta |
35120874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 42457593 - 42457698
Alignment:
| Q |
7 |
tcattctattcagtttagtggtctagag-gattctctaaaaattcccgcacaacttttaatattgtttggatttgtgcactattcattattttgaaggac |
105 |
Q |
| |
|
||||| |||||||||| ||||||||| ||||||||||||| | || ||||||||||||||||||||| || | ||| |||||||||| |||||| |
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| T |
42457593 |
tcattgtattcagtttgatggtctagaatgattctctaaaaaattccatacaacttttaatattgtttgggctttcgtactcttcattatttagaaggat |
42457692 |
T |
|
| Q |
106 |
cacaat |
111 |
Q |
| |
|
|||||| |
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|
| T |
42457693 |
cacaat |
42457698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23454035 - 23453814
Alignment:
| Q |
1 |
acaagttcattctattcagtttagtggtctagagg-attctctaaaaattcccgcacaacttttaatattgtttggatttgtgcactattcattattttg |
99 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||| || |||||||||||| || | ||| ||||||||||||||||||||| | ||||| ||||||| | |
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| T |
23454035 |
acaagctcattctattcagtttggtggtttagggggattctctaaaaaatctcatacatcttttaatattgtttggatttcggtcctattgattatttgg |
23453936 |
T |
|
| Q |
100 |
aaggaccacaatgagagaatttttaacaacaggacatcgactcttttttccctattgaaaaagttaaaaattcaagtcttctggtggttaaaatcaaatt |
199 |
Q |
| |
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||||| ||||| | || ||||||||||| |||||||| | ||||| | |||| |||| ||||||| |||| ||||| ||||||||||| || | |
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| T |
23453935 |
aaggatcacaaaggaaggatttttaacaagaggacatcttcccttttagctttattagaaaatctaaaaatccaagcattctgatggttaaaatctaact |
23453836 |
T |
|
| Q |
200 |
acaatttgttttgattttgacta |
222 |
Q |
| |
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||| |||| |||||||||||||| |
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| T |
23453835 |
acactttg-tttgattttgacta |
23453814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 36097966 - 36098034
Alignment:
| Q |
158 |
aaaagttaaaaattcaagtcttctggtggttaaaatcaaattacaatttgttttgattttgactacccta |
227 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||| |||| ||| ||||||||||| ||||||| |
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| T |
36097966 |
aaaaggtaaaaattcaagctttctggtggttaaaatcaaactacatattg-tttgattttgattacccta |
36098034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 6831693 - 6831620
Alignment:
| Q |
7 |
tcattctattcagtttagtggtcta-gaggattctctaaaaattcccgcacaacttttaatattgtttggattt |
79 |
Q |
| |
|
||||| |||||||||| |||| || ||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
6831693 |
tcattttattcagtttggtggcctctgaggattctctaaaaattctcgtacaacttttaatattgtttggattt |
6831620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 10398933 - 10399031
Alignment:
| Q |
34 |
ggattctctaaaaattcccgcacaacttttaatattgtttggatttgtgcactattcattattttgaaggaccacaatgagagaatttttaacaacagg |
132 |
Q |
| |
|
|||||||||||||||||||| | | || |||||||||||||||||| | | |||||||||| |||||| | ||||| ||| ||||||||||||||| |
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| T |
10398933 |
ggattctctaaaaattcccgtatagctcttaatattgtttggatttcggttttcttcattatttagaaggatcgcaatgtgaggatttttaacaacagg |
10399031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 146
Target Start/End: Complemental strand, 50618048 - 50617960
Alignment:
| Q |
59 |
cttttaatattgtttggatttgtgcactattcattattt-tgaaggaccacaatgagagaatttttaacaacaggacatcgactctttt |
146 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||| ||| || | ||||| || |||||||||||||||||||| ||||||| |
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| T |
50618048 |
cttttaatattgtttggatttcagtcctattcattatttaagaatgagcgcaatgggatgatttttaacaacaggacatctcctctttt |
50617960 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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