View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14229_low_41 (Length: 249)
Name: NF14229_low_41
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_low_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 24845795 - 24846025
Alignment:
| Q |
1 |
cggttctattttcttaaatcatcagtgtcagtgttgtgttaggtgtctgactatatcaatgtttcataacatgtacggaaaattcagagagggagaaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24845795 |
cggttctattttcttaaatcatcagtgtcggtgttgtgttaggtgtctggctata-------------acatgtacggaaaattcagagagggagaaaga |
24845881 |
T |
|
| Q |
101 |
cctcttctgtacgactaatggcaaagccgagctttgtatcttcctctctaagtttgatctctattgagaactctcctcccattggagcataccatagtcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24845882 |
cctcttctgtacgactaatggcaaagccgagctttgtatcttcctctctaagtttgatctctattgagaactctcctcccattggagcataccatagtcg |
24845981 |
T |
|
| Q |
201 |
aattgctctaacaacaccaatgtctactccgtgatattcttcga |
244 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
24845982 |
aattgctctaacgacaccaatgtctactccgtgataatcttcga |
24846025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 42044113 - 42043985
Alignment:
| Q |
98 |
agacctcttctgtacgactaatggcaaagccgagctttgtatcttcctctctaagtttgatctctattgagaactctcctcccattggagcataccatag |
197 |
Q |
| |
|
|||||||||| |||||||||||||| || || || |||| |||||| ||| | ||||||||||| || || | ||||||||| | |||||||||||||| |
|
|
| T |
42044113 |
agacctcttcggtacgactaatggcgaatccaagttttgaatcttcttcttttagtttgatctcaatagaaagctctcctccaactggagcataccataa |
42044014 |
T |
|
| Q |
198 |
tcgaattgctctaacaacaccaatgtcta |
226 |
Q |
| |
|
|||| ||||| ||||||||| ||||||| |
|
|
| T |
42044013 |
acgaactgctcgaacaacacctatgtcta |
42043985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University