View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_low_44 (Length: 244)
Name: NF14229_low_44
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_low_44 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 45604708 - 45604475
Alignment:
| Q |
11 |
cacagatagcacaacatttgccaggaaggacagacaatgagataaaaaactattggcattcatatttgaaaaagagagtggccaaagctatggaaatgga |
110 |
Q |
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| T |
45604708 |
cacagatagcacaacatttgccaggaaggacagacaatgagataaaaaactattggcattcatatttgaaaaagagagtggccaaagctatggaaatgga |
45604609 |
T |
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| Q |
111 |
atcacacaaacaatttcaatatgctagctcaagctcagatacaatgaactcttcaccctctcttcaaaaacttgcaacacaagatccacacaattataag |
210 |
Q |
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| T |
45604608 |
atcacacaaacaatttcaatatgctagctcaagctcagatacaatgaactcttcaccctctcttcaaaaacttgcaacacaagatccacataattataag |
45604509 |
T |
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| Q |
211 |
agcatcaccaaagagactcatcaaagcaccttac |
244 |
Q |
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| T |
45604508 |
agcatcaccaaagagactcatcaaagcaccttac |
45604475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 20069851 - 20069999
Alignment:
| Q |
13 |
cagatagcacaacatttgccaggaaggacagacaatgagataaaaaactattggcattcatatttgaaaaagagagtggccaaagctatggaaatggaat |
112 |
Q |
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| T |
20069851 |
cagattgcacaacaattgccgggaaggaccgacaacgagattaaaaattattggcattcatatctgaaaaagaaagaagtcaaaagtaaggatattgaat |
20069950 |
T |
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| Q |
113 |
cacacaaacaatttcaatatgctagctcaagctcagatacaatgaactc |
161 |
Q |
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| T |
20069951 |
ctcatactcaaattcaatatgctagttcaagctcagatacaatgaactc |
20069999 |
T |
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