View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_low_45 (Length: 238)
Name: NF14229_low_45
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 40318737 - 40318956
Alignment:
| Q |
17 |
aaacacattgctaggaacacgttccacttcaagaacatacattaccggtttctataacaaccatattcaaatctaaaattttaaacacttcattttatgg |
116 |
Q |
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| T |
40318737 |
aaacacattgctaggaacacgttccacttcaagaacatacattaccggtttctataacaaccatattcaaatctaaaattttaaacacttcattttatgg |
40318836 |
T |
|
| Q |
117 |
agtgagcaataannnnnnnnncttccaaccattgtaatatttgatgtctcattaaataaaagttgcttccatacgactaggacaatacaccatccaccat |
216 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40318837 |
agtgagcaataatttgtttttcttccaaccattgtagtatttgatgtcacattaaataaaagttgcttccatacgactaggacaatacaccatccaccat |
40318936 |
T |
|
| Q |
217 |
gactgctcccaaactcagtg |
236 |
Q |
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|||||||||||||||||||| |
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| T |
40318937 |
gactgctcccaaactcagtg |
40318956 |
T |
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