View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14229_low_51 (Length: 232)

Name: NF14229_low_51
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14229_low_51
NF14229_low_51
[»] chr3 (22 HSPs)
chr3 (3-179)||(6733223-6733399)
chr3 (3-152)||(6944630-6944777)
chr3 (3-179)||(7585014-7585194)
chr3 (3-115)||(6557019-6557131)
chr3 (3-149)||(6941520-6941664)
chr3 (3-81)||(6944918-6944996)
chr3 (3-152)||(6782633-6782780)
chr3 (3-76)||(7585291-7585364)
chr3 (3-71)||(6523909-6523977)
chr3 (3-59)||(7585543-7585599)
chr3 (81-152)||(6410321-6410390)
chr3 (3-59)||(6523790-6523846)
chr3 (3-59)||(6841879-6841935)
chr3 (3-59)||(6530831-6530887)
chr3 (187-222)||(6530991-6531026)
chr3 (116-169)||(6785033-6785086)
chr3 (8-56)||(6880191-6880239)
chr3 (8-59)||(5247849-5247900)
chr3 (4-59)||(8571251-8571306)
chr3 (17-59)||(6242989-6243031)
chr3 (27-59)||(6451120-6451152)
chr3 (8-56)||(6897763-6897811)
[»] scaffold0425 (1 HSPs)
scaffold0425 (3-93)||(10067-10157)
[»] scaffold2053 (1 HSPs)
scaffold2053 (9-94)||(563-648)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 6733399 - 6733223
Alignment:
Q  3 aaaggagaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacatcccgaatgtgtggattgaccacattaagcagaaatgagatgttatg 102  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||    
T  6733399 aaaggagaagtatgaaaaggagggaggagagcgttggcatacaattagtcacatcccgaatgtgtggattgatggcattaagcaggaatgagatgttatg 6733300  T
Q  103 ggtcccacttttgtggtcaaatctttttggttcgaaagatacgaac--atattattaaccaaaccattgcatcaaatct 179  Q
    |||||||| ||  ||||||||||||||||||| | ||| |||||||  ||||| |||||||||| |||| |||||||||    
T  6733299 ggtcccacgtt--tggtcaaatctttttggtttggaaggtacgaacatatattcttaaccaaactattgaatcaaatct 6733223  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 6944777 - 6944630
Alignment:
Q  3 aaaggagaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacatcccgaatgtgtggattgaccacattaagcagaaatgagatgttatg 102  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||| | |||||| ||| ||||||||||||||    
T  6944777 aaaggagaagtatgaaaaggagggaggagagcgttggcatacaatttgtcacatcccgagtgtgtggattgatcgcattaaacaggaatgagatgttatg 6944678  T
Q  103 ggtcccacttttgtggtcaaatctttttggttcgaaagatacgaacatat 152  Q
    |||||||||||  |||||||| |||||||||| | ||| |||||||||||    
T  6944677 ggtcccacttt--tggtcaaacctttttggtttggaaggtacgaacatat 6944630  T

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Target: chr3; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 7585194 - 7585014
Alignment:
Q  3 aaaggagaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacatcccgaatgtgtgg----attgaccacattaagcagaaatgagatgt 98  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    |||||  | ||||||||| ||||||||||    
T  7585194 aaaggagaagtatgaaaaggagggaggagagcgttggcatacaattactcacatcccgaatgtgtggattaattgatgaaattaagcaggaatgagatgt 7585095  T
Q  99 tatgggtcccacttttgtggtcaaatctttttggttcgaaagatacgaac--atattattaaccaaaccattgcatcaaatct 179  Q
    |||||||||||| ||  ||||||||||||||||||| | ||| |||||||  ||||| |||||||||| |||| |||||||||    
T  7585094 tatgggtcccacatt--tggtcaaatctttttggtttggaaggtacgaacatatattcttaaccaaactattgaatcaaatct 7585014  T

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Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 6557019 - 6557131
Alignment:
Q  3 aaaggagaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacatcccgaatgtgtggattgaccacattaagcagaaatgagatgttatg 102  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||| | ||| | ||||||||||||||||||    
T  6557019 aaaggagaagtatgaaaaggagggaggagagcgttggcatacaattagtcacatcccttatgtgtggattgactatattcaacagaaatgagatgttatg 6557118  T
Q  103 ggtcccacttttg 115  Q
    |||||||||||||    
T  6557119 ggtcccacttttg 6557131  T

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Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 6941664 - 6941520
Alignment:
Q  3 aaaggagaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacatcccgaatgtgtggattgaccacattaagcagaaatgagatgttatg 102  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |  |||   ||||||| |||| | ||| ||||||||||||||    
T  6941664 aaaggagaagtatgaaaaggagggaggagagcgttggcatacaatttgtcacatccctatggtgacaattgacctcattgaacaggaatgagatgttatg 6941565  T
Q  103 ggtcccacttttgtggtcaaatctttttggttcgaaagatacgaaca 149  Q
    |||||||||||  ||||||||||||||||||||| ||| ||||||||    
T  6941564 ggtcccacttt--tggtcaaatctttttggttcggaaggtacgaaca 6941520  T

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Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 6944996 - 6944918
Alignment:
Q  3 aaaggagaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacatcccgaatgtgtggattgaccacatt 81  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6944996 aaaggagaagtatgaaaaggagggaggagagcgttggcatacaattagtcacatcccgaatgtgtggattgacgacatt 6944918  T

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Target: chr3; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 6782633 - 6782780
Alignment:
Q  3 aaaggagaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacatcccgaatgtgtggattgaccacattaagcagaaatgagatgttatg 102  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||   ||||| |||||||   |||| || | ||||||| ||||||    
T  6782633 aaaggagaagtatgaaaaggagggaggagagcgttggcatacaatttgtcacatccctcgtgtgttgattgacggaattaggccggaatgagaagttatg 6782732  T
Q  103 ggtcccacttttgtggtcaaatctttttggttcgaaagatacgaacatat 152  Q
    |||||||||||  |||||||| |||||||||||  ||  |||||||||||    
T  6782733 ggtcccacttt--tggtcaaacctttttggttctgaatgtacgaacatat 6782780  T

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Target: chr3; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 7585364 - 7585291
Alignment:
Q  3 aaaggagaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacatcccgaatgtgtggattgacc 76  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  7585364 aaaggagaagtatgaaaaggagggaggagagtgttggcatacaattagtcacatcccgaatgtgaggattgacc 7585291  T

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Target: chr3; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 6523909 - 6523977
Alignment:
Q  3 aaaggagaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacatcccgaatgtgtggat 71  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  6523909 aaaggagaagtatgaaaaggagggaggagagcgttggcatacaattactcacatcccgaatgtgtggat 6523977  T

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Target: chr3; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 7585599 - 7585543
Alignment:
Q  3 aaaggagaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacatccc 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7585599 aaaggagaagtatgaaaaggagggaggagagcgttggcatacaattagtcacatccc 7585543  T

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Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 6410321 - 6410390
Alignment:
Q  81 taagcagaaatgagatgttatgggtcccacttttgtggtcaaatctttttggttcgaaagatacgaacatat 152  Q
    ||||||| |||||||||||||||||||||||||  ||||||||||||||||||||| ||| |||||||||||    
T  6410321 taagcaggaatgagatgttatgggtcccacttt--tggtcaaatctttttggttcggaaggtacgaacatat 6410390  T

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Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 6523790 - 6523846
Alignment:
Q  3 aaaggagaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacatccc 59  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  6523790 aaaggagaagtatgaaaaggagggaggagagctttggcatacaattagtcacatccc 6523846  T

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Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 6841879 - 6841935
Alignment:
Q  3 aaaggagaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacatccc 59  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  6841879 aaaggagaagtatgaaaaggagggaggagagcgttggcacacaattagtcacatccc 6841935  T

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Target: chr3; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 6530831 - 6530887
Alignment:
Q  3 aaaggagaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacatccc 59  Q
    |||||||||||||||||||||| || |||||||||||||||||||| ||||||||||    
T  6530831 aaaggagaagtatgaaaaggagggacgagagcgttggcatacaattggtcacatccc 6530887  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 6530991 - 6531026
Alignment:
Q  187 attcttcttaattttatttcccttttttatattctt 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  6530991 attcttcttaattttatttcccttttttatattctt 6531026  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 6785033 - 6785086
Alignment:
Q  116 tggtcaaatctttttggttcgaaagatacgaacatattattaaccaaaccattg 169  Q
    ||||||||||||||||||| | ||| || ||||||||| |||||||||||||||    
T  6785033 tggtcaaatctttttggtttggaaggtatgaacatattcttaaccaaaccattg 6785086  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 6880239 - 6880191
Alignment:
Q  8 agaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacat 56  Q
    |||||||  ||||||||  ||||||||||||||||||||||||||||||    
T  6880239 agaagtaccaaaaggaggaaggagagcgttggcatacaattagtcacat 6880191  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 5247900 - 5247849
Alignment:
Q  8 agaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacatccc 59  Q
    |||||||  |||||||| |||||||| |||||||||||||| ||||||||||    
T  5247900 agaagtaccaaaaggagggaggagagtgttggcatacaattcgtcacatccc 5247849  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 8571251 - 8571306
Alignment:
Q  4 aaggagaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacatccc 59  Q
    |||||||||||| ||||| ||  |||||| ||||||||||||||| ||||||||||    
T  8571251 aaggagaagtatcaaaagaaggaaggagaacgttggcatacaattcgtcacatccc 8571306  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 6243031 - 6242989
Alignment:
Q  17 aaaaggagtgaggagagcgttggcatacaattagtcacatccc 59  Q
    ||||||||  |||||||||||||||||||||| ||||||||||    
T  6243031 aaaaggagcaaggagagcgttggcatacaatttgtcacatccc 6242989  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 6451120 - 6451152
Alignment:
Q  27 aggagagcgttggcatacaattagtcacatccc 59  Q
    |||||||||||||||| ||||||||||||||||    
T  6451120 aggagagcgttggcattcaattagtcacatccc 6451152  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 6897811 - 6897763
Alignment:
Q  8 agaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacat 56  Q
    |||||||  ||||||||  ||||||| ||||||||||||||||||||||    
T  6897811 agaagtaccaaaaggaggaaggagagtgttggcatacaattagtcacat 6897763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 10067 - 10157
Alignment:
Q  3 aaaggagaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacatcccgaatgtgtggattgaccacattaagcagaaatga 93  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||    
T  10067 aaaggagaagtatgaaaaggagggaggagagctttggcatacaattagtcacatcccgaatgtgtgcattgacaacattaagcaggaatga 10157  T

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Target: scaffold2053 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold2053
Description:

Target: scaffold2053; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 563 - 648
Alignment:
Q  9 gaagtatgaaaaggagtgaggagagcgttggcatacaattagtcacatcccgaatgtgtggattgaccacattaagcagaaatgag 94  Q
    |||||||||||||||| ||||||||  ||||||||||||||||||||||||  |||||  |||||||   ||| ||||||||||||    
T  563 gaagtatgaaaaggagggaggagagaattggcatacaattagtcacatccctcatgtgacgattgacggaattgagcagaaatgag 648  T

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