View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_low_8 (Length: 547)
Name: NF14229_low_8
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_low_8 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Original strand, 7156192 - 7156749
Alignment:
| Q |
1 |
acaatttagcccaagaatcttcatttcgatactccttcataagcca-----------aagtatcaccatgacaaagtatgcacaaacaatccatcatcac |
89 |
Q |
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| T |
7156192 |
acaatttagcccaagaatcttcatttccatactccttcataagccaaacatctgccaaagtatcaccatgacaaagtatgcacaaacaatccatcatcac |
7156291 |
T |
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| Q |
90 |
atttaagattggagaaaacacagacatccctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaatgcttcgtgta |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7156292 |
atttaagattggagaaaacacagacatccctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaatgcttcgtgta |
7156391 |
T |
|
| Q |
190 |
taaggaaaacgatgttctgcttcaaaccaattaaaagttccactaacgaaatttcctgttccggtattaggaaaacgataagggaaatgggtttgaatcc |
289 |
Q |
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| T |
7156392 |
taaggaaaacgatgttctgcttcaaaccaattaaaagttccactaacgaaatttcctgttccggtattaggaaaacgataagggaaatgggtttgaatcc |
7156491 |
T |
|
| Q |
290 |
ttctccaataatcggtacccatggtgtgaacatttacttgagttttcatagccctattaccattaataagagattcataccaagaaaccgcgaccacctt |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7156492 |
ttctccaataatcggtacccatggtgtgaacatttacttgagttttcatagccctattaccattaataagagattcataccaagaaactgcgaccacctt |
7156591 |
T |
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| Q |
390 |
gtaagtatcactggaatgatcatatccaaagccatacattgtgaaataactaggcattcgagttggaggaacttctagatagggcgactttgtaaatttg |
489 |
Q |
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| T |
7156592 |
gtaagtatcactggaatgatcatatccaaagccatacattgtgaaataactaggcgttcgagttggaggaacttctagatagggcgactttgtaaatttg |
7156691 |
T |
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| Q |
490 |
ctaatggaagggttccacaaatttgatcgagtgcggaacagagaatgccatgtcaaga |
547 |
Q |
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| T |
7156692 |
ctaatggaagggttccacaaatttgatcgagtgcgaaacagagaatgccatggcaaga |
7156749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 7174503 - 7174561
Alignment:
| Q |
120 |
tccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaa |
178 |
Q |
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| T |
7174503 |
tccataatcaggctgcaatatctctccataagactcattctccaaatgaagagaaacaa |
7174561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 7160754 - 7160801
Alignment:
| Q |
1 |
acaatttagcccaagaatcttcatttcgatactccttcataagccaaa |
48 |
Q |
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| T |
7160754 |
acaatttagtccaagaatcattatttccatactccttcataagccaaa |
7160801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 6538885 - 6538843
Alignment:
| Q |
1 |
acaatttagcccaagaatcttcatttcgatactccttcataag |
43 |
Q |
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| T |
6538885 |
acaatttagtccaagaatctttatttccatactccttcataag |
6538843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 7160901 - 7160946
Alignment:
| Q |
134 |
gcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaat |
179 |
Q |
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| T |
7160901 |
gcaatagctctcgataagactccttctccaaatcaagagaaacaat |
7160946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 9825635 - 9825696
Alignment:
| Q |
119 |
ctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaatg |
180 |
Q |
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| T |
9825635 |
ctccataatcaggctgcaaaatctcttgataggactctgtccccaaatcaagagaaacaatg |
9825696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 9819955 - 9820016
Alignment:
| Q |
119 |
ctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaatg |
180 |
Q |
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| T |
9819955 |
ctccataatcaggctgcaaaatctcttgataggactctctccccaaatcaagagaaacaatg |
9820016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 2442090 - 2442043
Alignment:
| Q |
1 |
acaatttagcccaagaatcttcatttcgatactccttcataagccaaa |
48 |
Q |
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| T |
2442090 |
acaatttagtccaagaatctttatttccatactccttcataatccaaa |
2442043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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