View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14229_low_9 (Length: 541)

Name: NF14229_low_9
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14229_low_9
NF14229_low_9
[»] chr2 (3 HSPs)
chr2 (16-295)||(37674013-37674293)
chr2 (293-534)||(37673500-37673745)
chr2 (437-497)||(15913628-15913688)
[»] chr3 (3 HSPs)
chr3 (437-497)||(3137784-3137844)
chr3 (437-491)||(24674430-24674484)
chr3 (103-176)||(32070641-32070716)
[»] chr7 (1 HSPs)
chr7 (437-497)||(24065246-24065306)
[»] chr8 (1 HSPs)
chr8 (437-497)||(25241930-25241990)
[»] chr1 (2 HSPs)
chr1 (451-497)||(8754500-8754546)
chr1 (102-181)||(31366928-31367008)
[»] chr5 (2 HSPs)
chr5 (436-497)||(32569595-32569656)
chr5 (451-479)||(38629729-38629757)


Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 37674293 - 37674013
Alignment:
Q  16 ttatggacttgcctcaaatagaaaatatcaagatttattttacacttataccttataggagtatgcaataactttacattatcaagaaaaaatagtaact 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37674293 ttatggacttgcctcaaatagaaaatatcaagatttattttacacttataccttataggagtatgcaataactttacattatcaagaaaaaatagtaact 37674194  T
Q  116 ttacattaaaattaataattttaaactttttaaaagttgaattatcactttccaccactttctaacgcaaannnnnnnattctcttaatcaaattttc-a 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| |    
T  37674193 ttacattaaaattaataattttaaactttttaaaagttgaattatcactttccaccactttctaacgcaattttttttattctcttaatcaaattttcta 37674094  T
Q  215 agactattttctagcatttccttaaaataataaattgtacccacgtaacaattgggaccatttccttaaaagaaaaaggta 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37674093 agactattttctagcatttccttaaaataataaattgtacccacgtaacaattgggaccatttccttaaaagaaaaaggta 37674013  T

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Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 293 - 534
Target Start/End: Complemental strand, 37673745 - 37673500
Alignment:
Q  293 gtaattgggaccattactgcaacttttaatgcaaggtgtgaaagcataatgaaaaacgtaaattaacattaaaagaattaattgtcttttaacaagttta 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37673745 gtaattgggaccattactgcaacttttaatgcaaggtgtgaaagcataatgaaaaacgtaaattaacattaaaagaattaattgtcttttaacaagttta 37673646  T
Q  393 ttaagaacaattgggaccatttcctcaacctctctctaacatcttgtactcactttcacatctatgagaaatgagactattttctatttcttgctttccg 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37673645 ttaagaacaattgggaccatttcctcaacctctctctaacatcttgtactcactttcacatctatgagaaatgagactattttctatttcttgctttccg 37673546  T
Q  493 taacagtgatgaccctat----ctataaggtaattggttcatctca 534  Q
    ||||||||||||||||||    ||||||||||||||||||||||||    
T  37673545 taacagtgatgaccctatctatctataaggtaattggttcatctca 37673500  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 497
Target Start/End: Complemental strand, 15913688 - 15913628
Alignment:
Q  437 tgtactcactttcacatctatgagaaatgagactattttctatttcttgctttccgtaaca 497  Q
    ||||||| ||||||||||||||| ||||||  |||||||| ||||||  |||||| |||||    
T  15913688 tgtactctctttcacatctatgacaaatgaagctattttccatttctcactttccataaca 15913628  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 437 - 497
Target Start/End: Complemental strand, 3137844 - 3137784
Alignment:
Q  437 tgtactcactttcacatctatgagaaatgagactattttctatttcttgctttccgtaaca 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3137844 tgtactcactttcacatctatgagaaatgagactattttctatttcttgctttccataaca 3137784  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 437 - 491
Target Start/End: Original strand, 24674430 - 24674484
Alignment:
Q  437 tgtactcactttcacatctatgagaaatgagactattttctatttcttgctttcc 491  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||  |||||||||    
T  24674430 tgtactcactttcacatctatgagaaatgagcctattttctcttctttgctttcc 24674484  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 32070641 - 32070716
Alignment:
Q  103 aaaaatagtaactttacattaaaattaataatttt-aaactttttaaaagttgaatt-atcactttccaccacttt 176  Q
    ||||||||||  |||| ||||||| | |||||||| |||||||| |||||||||||| |||||||| |||||||||    
T  32070641 aaaaatagtagttttatattaaaaattataattttcaaacttttaaaaagttgaattcatcacttttcaccacttt 32070716  T

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Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 437 - 497
Target Start/End: Complemental strand, 24065306 - 24065246
Alignment:
Q  437 tgtactcactttcacatctatgagaaatgagactattttctatttcttgctttccgtaaca 497  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||    
T  24065306 tgtactcacttttacatctatgagaaatgagactattttctattttttgctttccataaca 24065246  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 437 - 497
Target Start/End: Complemental strand, 25241990 - 25241930
Alignment:
Q  437 tgtactcactttcacatctatgagaaatgagactattttctatttcttgctttccgtaaca 497  Q
    |||||| |||||||||||||||||||||||||||||||||||||  || ||||||||||||    
T  25241990 tgtacttactttcacatctatgagaaatgagactattttctattattttctttccgtaaca 25241930  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 497
Target Start/End: Original strand, 8754500 - 8754546
Alignment:
Q  451 catctatgagaaatgagactattttctatttcttgctttccgtaaca 497  Q
    ||||||||||||||||||||||||||||| | | ||||||| |||||    
T  8754500 catctatgagaaatgagactattttctatctttagctttccataaca 8754546  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 31367008 - 31366928
Alignment:
Q  102 aaaaaatagtaactttacattaaaattaataattttaaactttttaaaagttgaatt-atcactttccaccactttctaac 181  Q
    |||||||||||||||||||||  || ||| || ||| ||||||| |||| ||||||| | |||||| || |||||||||||    
T  31367008 aaaaaatagtaactttacattggaaataaaaaattttaacttttaaaaaattgaattcaccacttttcatcactttctaac 31366928  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 497
Target Start/End: Original strand, 32569595 - 32569656
Alignment:
Q  436 ttgtactcactttcacatctatgagaaatgagactattttctatttcttgctttccgtaaca 497  Q
    |||||||| ||||  ||||||||||||||||||||| ||||||| | || |||||| |||||    
T  32569595 ttgtactccctttttcatctatgagaaatgagactactttctatcttttactttccataaca 32569656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 479
Target Start/End: Complemental strand, 38629757 - 38629729
Alignment:
Q  451 catctatgagaaatgagactattttctat 479  Q
    |||||||||||||||||||||||||||||    
T  38629757 catctatgagaaatgagactattttctat 38629729  T

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