View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1422R-Insertion-10 (Length: 399)
Name: NF1422R-Insertion-10
Description: NF1422R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422R-Insertion-10 |
 | |
|
| [»] chr5 (15 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 9 - 399
Target Start/End: Complemental strand, 41366625 - 41366235
Alignment:
| Q |
9 |
tcaagggatgttgtgagtgatttacacgttgaatcttgagaagaacatctactagatcatcattcttcccagctttcttgtgactacttttgtgatcatc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41366625 |
tcaagggatgttgtgagtgatttacacgttgaatcttgagaagaacatctactagatcatcattcttcctagctttcttgtgactacttttgtgatcatc |
41366526 |
T |
|
| Q |
109 |
gatgatctcttgcaatatcatatcagtctctctatgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaatagaaggatacaaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41366525 |
gatgatctcttgcaatatcatatcagtctctctatgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaatagaaggatacaaa |
41366426 |
T |
|
| Q |
209 |
tctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41366425 |
tctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgcccgcgctg |
41366326 |
T |
|
| Q |
309 |
tcatcccaattgttaatgagaggatcatttgagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctc |
399 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41366325 |
tcatcccaattgttaatgagagaatcatttgagtgagattaacaaccgatccttcacttgcagttattgatttaacaagatttgacacctc |
41366235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 36 - 392
Target Start/End: Complemental strand, 41332418 - 41332062
Alignment:
| Q |
36 |
gttgaatcttgagaagaacatctactagatcatcattcttcccagctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| || | |||| ||||||| | ||| ||||||| |||||||| ||||||| |||||||||| |
|
|
| T |
41332418 |
gttgaatcttgagaagaacatctactagatcttcatcgttgcttgcttccttgtgaatgcttctgtgatcgtcgatgatgtcttgcattatcatatcaag |
41332319 |
T |
|
| Q |
136 |
ctctctatgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagc |
235 |
Q |
| |
|
||||||||||| |||||| | ||| || | || ||| | |||||| |||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
41332318 |
ctctctatgaattttttccattttggtcttctccctactcatgcattgaagcattttaatagaaggatacaaatctgcaatttcaaatcctcctaatagc |
41332219 |
T |
|
| Q |
236 |
ttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagaggatca |
335 |
Q |
| |
|
|||| || || |||||||||| | ||||| ||||||| | ||||| |||| ||||| |||| ||||||||| |||||| |||| | ||||| ||| |
|
|
| T |
41332218 |
accaatactttctccattgctgatatgaacacatcttggtttctattccttttcccaaaagctgcccgcgctgttatcccatttgtcattgagaaaatct |
41332119 |
T |
|
| Q |
336 |
tttgagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttg |
392 |
Q |
| |
|
| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41332118 |
tccgagtgagatttacaaccgatccttcacttgcagttattgatttaacaagatttg |
41332062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 36 - 399
Target Start/End: Complemental strand, 41328405 - 41328042
Alignment:
| Q |
36 |
gttgaatcttgagaagaacatctactagatcatcattcttcccagctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| || | |||| ||||||| ||||| ||||||| |||||||| ||||| |||||||||| | |
|
|
| T |
41328405 |
gttgaatcttgagaagaacatctactagatcttcatcattgcttgcttccttgtgaatacttctgtgatcgtcgatgatgtcttgtgctatcatatcaat |
41328306 |
T |
|
| Q |
136 |
ctctctatgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagc |
235 |
Q |
| |
|
|||| ||||||||||||| | ||| || | || | | | | |||||| | |||||||||||||||||||||||||| ||||| ||| |||||| |
|
|
| T |
41328305 |
ctctgtatgaagtttttccattttggtcttctccctagtcatccattgaagcaatttaatagaaggatacaaatctgcaatttcaaatcttcctaatagc |
41328206 |
T |
|
| Q |
236 |
ttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagaggatca |
335 |
Q |
| |
|
| || || || || ||||| | | ||||| ||||||||| ||||| |||| ||||| |||| ||||||||| |||||| |||| | ||||| ||| |
|
|
| T |
41328205 |
accactactttctccaatgctggtatgaacacatcttggtgtctattccttttcccaaaagctgcccgcgctgttatcccatttgtcattgagaaaatct |
41328106 |
T |
|
| Q |
336 |
tttgagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctc |
399 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41328105 |
tccgagtgagattaacaactgatccttcacttgcagttattgatttaacaaggtttgacacctc |
41328042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 36 - 392
Target Start/End: Complemental strand, 41316438 - 41316082
Alignment:
| Q |
36 |
gttgaatcttgagaagaacatctactagatcatcattcttcccagctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| || | ||| ||||||| | ||||||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
41316438 |
gttgaatcttgagaagaacatctactagatcttcatcattgctttcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgtcatatcaag |
41316339 |
T |
|
| Q |
136 |
ctctctatgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagc |
235 |
Q |
| |
|
|||| | ||||||||||| | ||| || | | | ||| || |||||| | ||||||||||||| ||||||| ||| | ||| |||||||| | |
|
|
| T |
41316338 |
ctctttgtgaagtttttccattttggtcttcgctctactcaagcattgaagcaatttaatagaaggaaacaaatccacaatacaaacgcctcccaacaaa |
41316239 |
T |
|
| Q |
236 |
ttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagaggatca |
335 |
Q |
| |
|
| || ||||| ||||||||| ||||||||||||||||||| || |||| ||||| || | |||||||| |||||| ||| ||| | ||| |
|
|
| T |
41316238 |
cttgctacttcctctattgctgatctaaacacttcttggtgtttgctccttttcccaaaagccgctcgcgctgttatcccatatgtcgttgacaaaatct |
41316139 |
T |
|
| Q |
336 |
tttgagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttg |
392 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41316138 |
tctgagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttg |
41316082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 36 - 393
Target Start/End: Complemental strand, 41324507 - 41324150
Alignment:
| Q |
36 |
gttgaatcttgagaagaacatctactagatcatcattcttcccagctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagt |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | || | | ||| ||||||| | ||||||||||| ||||| || |||||||||||||||||| | |
|
|
| T |
41324507 |
gttgaatcttgagaagaacatctactagatattcttcattgctatcttccttgtgaatgcttttgtgatcgtcgataatgtcttgcaatatcatatcaat |
41324408 |
T |
|
| Q |
136 |
ctctctatgaagtttttcaagttttttccttggcca-acttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatag |
234 |
Q |
| |
|
|||| | ||||||||||| | |||| |||| ||| ||| | |||||| | ||||||||||||||||||||| ||| | ||| |||||||| | |
|
|
| T |
41324407 |
ctctttgtgaagtttttcca-ttttggccttcgccctactcacgcattgaagcaatttaatagaaggatacaaatcaacaatacaaatgcctcccaacaa |
41324309 |
T |
|
| Q |
235 |
cttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagaggatc |
334 |
Q |
| |
|
| | |||||||| | ||||||||||||| || |||||||| || |||| ||||| || | ||||| ||| |||||| ||| | ||||| ||| |
|
|
| T |
41324308 |
acttactatttcctctactgctgatttaaacgattgctggtgtttgctccttttgccaaaagccgcccgcgttgttatcccatatgtcattgagaaaatc |
41324209 |
T |
|
| Q |
335 |
atttgagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttga |
393 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
41324208 |
ttatgagtgagattaacaattgatccttcacttgcagttattgatgtagcaagatttga |
41324150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 36 - 399
Target Start/End: Original strand, 31188453 - 31188816
Alignment:
| Q |
36 |
gttgaatcttgagaagaacatctactagatcatcattcttcccagctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagt |
135 |
Q |
| |
|
||||||||||||||||| ||| |||||||| |||| ||| | ||| ||||||| | |||| |||||| ||||||| |||||||||||||||||| | |
|
|
| T |
31188453 |
gttgaatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcaacgatgatatcttgcaatatcatatcaat |
31188552 |
T |
|
| Q |
136 |
ctctctatgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagc |
235 |
Q |
| |
|
|||| ||||||| ||||||| ||| || | | || ||| | | ||||| ||||||| ||||||||||| ||| |||| | ||||| |||||| | |
|
|
| T |
31188553 |
ctctttatgaagcttttcaactttcgtcttcgccctactcacccattgaaacattttaacagaaggatacacatcagcaatacaaaattctcccagcaaa |
31188652 |
T |
|
| Q |
236 |
ttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagaggatca |
335 |
Q |
| |
|
|| ||| ||||| ||||||||||| || |||||||||||||| || |||| ||||| |||| || | || ||||| ||| | | | | ||| |
|
|
| T |
31188653 |
ctagctatctcctttattgctgatttgaaagcttcttggtgtttactccttttcccaaacgctgctcgtgtcgttatccctgatgtcattaaaaaaatct |
31188752 |
T |
|
| Q |
336 |
tttgagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctc |
399 |
Q |
| |
|
| ||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31188753 |
tatgactgagattaacaattgatccttcacttgcagatattgatttaacaagatttgacacctc |
31188816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 399
Target Start/End: Original strand, 31178408 - 31178771
Alignment:
| Q |
36 |
gttgaatcttgagaagaacatctactagatcatcattcttcccagctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagt |
135 |
Q |
| |
|
|||||||||||| ||| |||| |||||||| |||| ||| | ||| ||||||| | |||| |||||||||| ||| |||||||||||||||||| | |
|
|
| T |
31178408 |
gttgaatcttgataagtgcatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgacgatatcttgcaatatcatatcaat |
31178507 |
T |
|
| Q |
136 |
ctctctatgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagc |
235 |
Q |
| |
|
|||| |||||| ||||||| ||| || | || ||| | | |||||| ||||||||||||||||||| ||| |||| | |||||||||||| | |
|
|
| T |
31178508 |
ctctttatgaaacttttcaaatttggtcttcaccccactcacccgttgaagcattttaatagaaggatacacatcagcaatacaaaatcctcccatcaaa |
31178607 |
T |
|
| Q |
236 |
ttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagaggatca |
335 |
Q |
| |
|
| ||||||||| |||||||||| ||||||| ||||||||||||| |||| ||||| |||| || | || ||| | ||| | || || ||| |
|
|
| T |
31178608 |
ctcgctatttcctttattgctgattggaacacttgttggtgtttattccttttcccaaacgctgctcgtgtcgttatcgccgatgtcattgcgaaaatct |
31178707 |
T |
|
| Q |
336 |
tttgagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctc |
399 |
Q |
| |
|
| ||| ||||||| ||||||||||||| ||||| || ||| ||||||| ||||||||||||||| |
|
|
| T |
31178708 |
tatgactgagatttacaactgatcctttacttgtagatatcgatttaataagatttgacacctc |
31178771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 96 - 261
Target Start/End: Complemental strand, 41369869 - 41369703
Alignment:
| Q |
96 |
ttttgtgatcatcgatgatctcttgcaatatcatatca-gtctctctatgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaa |
194 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| |||||| | || ||| ||||||||||| | ||| || ||| || ||||| | ||||||| ||||||| |
|
|
| T |
41369869 |
ttttgtgatcattgatgatatcttgcaatataatatcatgcctttctctgaagtttttccattttggtctttgccctacttaccctttgaagtattttaa |
41369770 |
T |
|
| Q |
195 |
tagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgattt |
261 |
Q |
| |
|
|||||||||||||||| |||| |||||||| |||||| ||| | | ||||| |||||||||||| |
|
|
| T |
41369769 |
tagaaggatacaaatcagcaatgcaaaatccttccaataactttattgattcctccattgctgattt |
41369703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 399
Target Start/End: Complemental strand, 31225360 - 31224997
Alignment:
| Q |
36 |
gttgaatcttgagaagaacatctactagatcatcattcttcccagctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagt |
135 |
Q |
| |
|
|||| |||||||||||| ||| |||||||| |||| ||| | ||| ||||||| | |||| |||||||||||||| |||||||||||||||||| | |
|
|
| T |
31225360 |
gttgtatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgatgatatcttgcaatatcatatcaat |
31225261 |
T |
|
| Q |
136 |
ctctctatgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagc |
235 |
Q |
| |
|
|||| ||||||| ||||||| ||| || | | || ||| | | |||||| ||||| ||||||||||||| ||| ||| | |||||||||||| | |
|
|
| T |
31225260 |
ctctttatgaagcttttcaactttggtcttcgccctactcacccattgaagcatttttatagaaggatacacatcaacaatacaaaatcctcccatcaaa |
31225161 |
T |
|
| Q |
236 |
ttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagaggatca |
335 |
Q |
| |
|
|| ||| ||||| | ||||||| | ||||||| || || |||||| |||| ||||| |||| | | | || ||||| ||| | || ||| |
|
|
| T |
31225160 |
ctagttatctcctttagtgctgatctgaacacttgatgctgcttattccttttcccaaacgctgcctgtgtcgttatccccgatgtcattgcataaatct |
31225061 |
T |
|
| Q |
336 |
tttgagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctc |
399 |
Q |
| |
|
| ||| | |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
31225060 |
tatgactcagattaacaattgatccttcacttgcagatattgattcaacaagatttgacacctc |
31224997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 153
Target Start/End: Complemental strand, 41310694 - 41310581
Alignment:
| Q |
40 |
aatcttgagaagaacatctactagatcatcattcttcccagctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagtctct |
139 |
Q |
| |
|
||||||||||||||||||||||||||| |||| || | | ||| |||| || | ||||||||||| |||||||| |||||||||||||||| | ||||| |
|
|
| T |
41310694 |
aatcttgagaagaacatctactagatcttcatcattgctatcttccttgcgaatgcttttgtgatcgtcgatgatgtcttgcaatatcatataaatctct |
41310595 |
T |
|
| Q |
140 |
ctatgaagtttttc |
153 |
Q |
| |
|
| |||| |||||| |
|
|
| T |
41310594 |
ttgtgaactttttc |
41310581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 392
Target Start/End: Complemental strand, 41322344 - 41322132
Alignment:
| Q |
181 |
ttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgttta |
280 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| ||||| ||| |||||| | || || || || ||||| | | ||||| ||||||||| || |
|
|
| T |
41322344 |
ttgaagcaatttaatagaaggatacaaatctgcaatttcaaatcttcctaatagcaccactactttctccaatgctggtatgaacacatcttggtgtcta |
41322245 |
T |
|
| Q |
281 |
ttcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagaggatcatttgagtgagattaacaactgatccttcactt-gcagttattgat |
379 |
Q |
| |
|
||| |||| ||||| | | || |||||| |||||| ||| | ||||| ||| | | | |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41322244 |
ttccttttcccaaaaaccgccctcgctgttatcccatatgtcattgagaaaatcttctcactgagattaacaactgatccttcacttaaaagttattgat |
41322145 |
T |
|
| Q |
380 |
ttaacaagatttg |
392 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41322144 |
ttaacaagatttg |
41322132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 185 - 369
Target Start/End: Complemental strand, 41286325 - 41286141
Alignment:
| Q |
185 |
agaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattct |
284 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| |||||||||||| || | ||| ||||| ||||||| |||| || ||||||||||| | |||| |
|
|
| T |
41286325 |
agaaatttaatagaaggatacaaatcaacaatgcaaaatcctcccatcaggctcaatgcttcctccattgctaatttgaatgcttcttggtgtatgttct |
41286226 |
T |
|
| Q |
285 |
tttttccaaatgctgtccgcgctgtcatcccaattgttaatgagaggatcatttgagtgagattaacaactgatccttcacttgc |
369 |
Q |
| |
|
|||| ||||| | || ||||| || |||||| ||| ||| | ||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
41286225 |
ttttcccaaaagttgcacgcgccgttatcccataggttgttgacaaaatcttctgagtgagattaacaactgatccttcacttgc |
41286141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 399
Target Start/End: Complemental strand, 41337040 - 41336984
Alignment:
| Q |
343 |
gagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctc |
399 |
Q |
| |
|
||||||||| | |||||||||| |||||| ||||||||||||||||| |||||||| |
|
|
| T |
41337040 |
gagattaacgattgatccttcatttgcagatattgatttaacaagatcggacacctc |
41336984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 299
Target Start/End: Complemental strand, 41337203 - 41337084
Alignment:
| Q |
180 |
tttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgttt |
279 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||| | ||||| |||||||||| ||| ||||| |||| |||||| |||| || ||||||| | |
|
|
| T |
41337203 |
tttgaagtattttaatagaaggatacaagtcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacaattgttggtgtct |
41337104 |
T |
|
| Q |
280 |
attcttttttccaaatgctg |
299 |
Q |
| |
|
|||||||| ||||| |||| |
|
|
| T |
41337103 |
gttctttttcccaaacgctg |
41337084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 41431311 - 41431253
Alignment:
| Q |
96 |
ttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttca |
154 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||| ||||||| |||||| |||||||||| |
|
|
| T |
41431311 |
ttttatgatcattgatgatgtcttgcaatatcgtatcagtttctctacaaagtttttca |
41431253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 389
Target Start/End: Original strand, 17249141 - 17249494
Alignment:
| Q |
36 |
gttgaatcttgagaagaacatctactagatcatcattcttcccagctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagt |
135 |
Q |
| |
|
|||||||||||| |||| |||| |||||||| |||| ||| | ||||| || || | | || |||||||||| ||||| |||||||||||||||||| | |
|
|
| T |
17249141 |
gttgaatcttgataagagcatcaactagatcttcatccttgcgtgctttgttttgtccatttctgtgatcatctatgatatcttgcaatatcatatcaat |
17249240 |
T |
|
| Q |
136 |
ctctctatgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagc |
235 |
Q |
| |
|
|| |||||||||||||| | ||| | | | ||||| | ||| ||| ||||| ||||||||||||||||| ||| | ||||||||||||| | |
|
|
| T |
17249241 |
ttccctatgaagtttttccattttggttttcacctgacttacccttttaagtattttgatagaaggatacaaatcaacaatacaaaatcctcccaacaaa |
17249340 |
T |
|
| Q |
236 |
ttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagaggatca |
335 |
Q |
| |
|
| | |||||||| ||||||||||| ||||||| ||||||||| ||| |||| || || |||| ||||| |||||| |||||| || ||| |
|
|
| T |
17249341 |
ctcactatttcctctattgctgatttgaacacttgttggtgtttgttccttttcccgaaagctgctcgcgccactatcccatatgttaaagaagaaatct |
17249440 |
T |
|
| Q |
336 |
tttgagtgagattaacaactgatccttcacttgcagttattgatttaacaagat |
389 |
Q |
| |
|
| ||||||||||||||||| |||||||||||| | ||||||||||||||||| |
|
|
| T |
17249441 |
tctgagtgagattaacaacacatccttcacttgaaaatattgatttaacaagat |
17249494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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