View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422R-Insertion-12 (Length: 341)
Name: NF1422R-Insertion-12
Description: NF1422R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422R-Insertion-12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 158 - 341
Target Start/End: Complemental strand, 39524512 - 39524329
Alignment:
| Q |
158 |
ttaaacctacgcaagagagagaattttaatacacgtggcttgttgctgtgataggggaacagtaagaactgtgtgtatggtactgtaggcaagtctattc |
257 |
Q |
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| T |
39524512 |
ttaaacctacgcaagagagagaattttaatacacgtggcttgttgttgtgataggggaacagtaagaactgtgtgtatggtactgtaggcaagtctattc |
39524413 |
T |
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| Q |
258 |
caaaactaaaacccctttgtaacgattgttaccatcccttccaaccttcttcacgttccttctcctaaaaccctaaaaatggcg |
341 |
Q |
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| T |
39524412 |
caaaactaaaactcctttgtaacgattgttcccatcccttccaaccttcttcacgttccttctcctaaaaccctaaaaatggcg |
39524329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 39525800 - 39525679
Alignment:
| Q |
2 |
atcatcacaaacatcgatcctccaaaactcccgtaaacaaccattctcctagcttttcatttcccgatttctcatagatttttcaattttatttgattct |
101 |
Q |
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| T |
39525800 |
atcatcacaaacatcaatcctccaaaactcccgtaaacaaccattctcctagcttttcacttcccgatttctc--agatttttcaattttatttgattct |
39525703 |
T |
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| Q |
102 |
cgtaggttttataacggtttaacc |
125 |
Q |
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| T |
39525702 |
cgtaggttttataacggtttaacc |
39525679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 41215761 - 41215713
Alignment:
| Q |
2 |
atcatcacaaacatcga-tcctccaaaactcccgtaaacaaccattctc |
49 |
Q |
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| T |
41215761 |
atcatcacaaacatcaaatcctccaaaactcccgtaagcaaccattctc |
41215713 |
T |
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