View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422R-Insertion-14 (Length: 223)
Name: NF1422R-Insertion-14
Description: NF1422R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422R-Insertion-14 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 22813103 - 22813318
Alignment:
| Q |
8 |
acctctagttgttcatgaagacgcctctgaacgtctagctgcagctgaagtgcctctctaatttgcaaaccactgcaaattacgaaaagaaatatagttt |
107 |
Q |
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| T |
22813103 |
acctctagttgttcatgaagacgcctctgaacgtctagctgcagctgaagtgcctctctaatttgcaaaccactgcaaattacgaaaagaaatatagttt |
22813202 |
T |
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| Q |
108 |
gttacaatatgaaaataagcaagaaatgattgcactggaattacagaacataacaatcggaaaaatatgtaagtagcattacgatttggcatcaaggttc |
207 |
Q |
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| T |
22813203 |
gttacaatatgaaaataagcaagaaatgattgcactggaattatagaacataacaatcggaaaaataagtaagtagcattacgatttcgcatcaaggttc |
22813302 |
T |
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| Q |
208 |
acattctctacatgag |
223 |
Q |
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|||||||||||||||| |
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| T |
22813303 |
acattctctacatgag |
22813318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 22810129 - 22810171
Alignment:
| Q |
178 |
aagtagcattacgatttggcatcaaggttcacattctctacat |
220 |
Q |
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| T |
22810129 |
aagtagcattacgatttggcatcaagatgcatattctctacat |
22810171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 40382614 - 40382825
Alignment:
| Q |
8 |
acctctagttgttcatgaagacgcctctgaacgtctagctgcagctgaagtgcctctctaatttgcaaaccactgcaaattacgaaaagaaatata--gt |
105 |
Q |
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| T |
40382614 |
acctcaagttgatcatgaagacgcctctgaacatctagctgcagctgaagtgcctctttaatctgcaaacccctgcaaattataaaaacaaatatagtgt |
40382713 |
T |
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| Q |
106 |
ttgttacaatatgaaaataagcaagaaatgattgcactgga--attacagaacataacaatcggaaaaatatgtaagtagcattacgatttggcatcaag |
203 |
Q |
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| T |
40382714 |
ttgttgcaatatgaaaataagcaagaaatgattgcactggaatattatagaacataacaatacgaaaaataagtaagtagcattacaatttggcatcaag |
40382813 |
T |
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| Q |
204 |
gttcacattctc |
215 |
Q |
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| T |
40382814 |
attcacattctc |
40382825 |
T |
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