View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422R-Insertion-15 (Length: 216)
Name: NF1422R-Insertion-15
Description: NF1422R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422R-Insertion-15 |
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| [»] scaffold0156 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 21376100 - 21376235
Alignment:
| Q |
78 |
tgcattgtattaaaatcaatgggtgtcgaaggaatatcgaaaaaagaatgatttctattttattattgagaaaatgcaatcttgtcttgcttcttggagg |
177 |
Q |
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| T |
21376100 |
tgcattgtattaaaatcaatgagtgtcgaaggaatagcgaaaaaagaatgatttctattttattattgagaaaaagcaatcttgtcttgcttcttggaag |
21376199 |
T |
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| Q |
178 |
aatagactgttaaacaaacctgaaagaatgactctt |
213 |
Q |
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| T |
21376200 |
aataaactgttaaacaaatctggaagaatgactctt |
21376235 |
T |
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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 35062781 - 35062718
Alignment:
| Q |
123 |
gaatgatttctattttattattgagaaaatgcaatcttgtcttgcttcttggaggaatagactg |
186 |
Q |
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| T |
35062781 |
gaatgatttttattttattattgagaaaatgcaatatagacttgcttcttggaagaatagactg |
35062718 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 213
Target Start/End: Original strand, 9535188 - 9535278
Alignment:
| Q |
123 |
gaatgatttctattttattattgagaaaatgcaatcttgtcttgcttcttggaggaatagactgttaaacaaacctgaaagaatgactctt |
213 |
Q |
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| T |
9535188 |
gaatgatttttattttattattgagataatgcaattcagactcgctttttggaagaatagattgctaaacaaacctgatagattgactctt |
9535278 |
T |
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Target: scaffold0156 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0156
Description:
Target: scaffold0156; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 17774 - 17726
Alignment:
| Q |
127 |
gatttctattttattattgagaaaatgcaatcttgtcttgcttcttgga |
175 |
Q |
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| T |
17774 |
gatttctattttattattgagaaaatgtaaactagacttgcttcttgga |
17726 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 1353462 - 1353424
Alignment:
| Q |
118 |
aaaaagaatgatttctattttattattgagaaaatgcaa |
156 |
Q |
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| T |
1353462 |
aaaaggaataatttctattttattattgagaaaatgcaa |
1353424 |
T |
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