View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422R-Insertion-16 (Length: 194)
Name: NF1422R-Insertion-16
Description: NF1422R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422R-Insertion-16 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0350 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 59 - 194
Target Start/End: Complemental strand, 15447681 - 15447539
Alignment:
| Q |
59 |
tacaccgacgcactaaacatttatttatatcttgtgtttggttaatgtaacttcccttaaacaaaaaggaaaagaaaa-------ccataaacatatggc |
151 |
Q |
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| T |
15447681 |
tacaccgacgcactaaacatttatttagatgttgtgtttggttaatgaaacttcccttaaacaaaaaacaaaaaaaaaaaaaaaaccataaacatatggc |
15447582 |
T |
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| Q |
152 |
aaaagtcgtaagccaactttgtacaggttctttaaactatcgt |
194 |
Q |
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| T |
15447581 |
aaaagtcgtaagccaactttgtacaggttctttaaactatcgt |
15447539 |
T |
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Target: scaffold0350 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0350
Description:
Target: scaffold0350; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 1284 - 1319
Alignment:
| Q |
8 |
atatgtaaggtctggagttcaaactccggtcaccac |
43 |
Q |
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| T |
1284 |
atatgtaaggtctggagttcaaactccggccaccac |
1319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 6038300 - 6038265
Alignment:
| Q |
8 |
atatgtaaggtctggagttcaaactccggtcaccac |
43 |
Q |
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| T |
6038300 |
atatgtaaggtctggagttcaaactccggccaccac |
6038265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 30753762 - 30753797
Alignment:
| Q |
8 |
atatgtaaggtctggagttcaaactccggtcaccac |
43 |
Q |
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| T |
30753762 |
atatgtaaggtctggagttcaaactccggccaccac |
30753797 |
T |
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