View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422R-Insertion-2 (Length: 918)
Name: NF1422R-Insertion-2
Description: NF1422R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422R-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 815; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 815; E-Value: 0
Query Start/End: Original strand, 9 - 905
Target Start/End: Original strand, 31098307 - 31099205
Alignment:
| Q |
9 |
attcgcacatgtcaacacccctttgcttttgaggagcttcacagccatctacttgctcatgatgactaccttcgtcattaaacacaaactgatatacaag |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31098307 |
attcgcacatgtcaacacccctttgcttttgaggagcttcacagccatctacttgctcacgatgactaccttcgtcattaaacacaaactgatatacaag |
31098406 |
T |
|
| Q |
109 |
ttccttttgcaaattttgcaatgctgcggcggcaaagacggtcttctcccaacaccatctcatggtcgtgacttcttcaataataagccatctcaaacaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31098407 |
ttccttttgcaaattttgcaatgctgcggcggcaaagacggtcttctcccaacaccatctcatggtcgtgacttcttcaataataagccatctcaaacaa |
31098506 |
T |
|
| Q |
209 |
acgcatctttctcttctcgcagtacatagctctcattttcttaaaactcgtggctttaccttgttgcaacagacctccatcaagatgcaaaaaatactcc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| |
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| T |
31098507 |
acgcatctttctcttctcgcagtacatagctctcattttcttaaaactcgtggctttacctcgttgcaacagacctccatcaagatgcaaatattactcc |
31098606 |
T |
|
| Q |
309 |
ctccttggtcacaatctcccactgccttcgcaaccacctgctcatcctctctttggcatgctcatttcagtcatttctcctaaaaaattctcactcgaat |
408 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31098607 |
ctccttggtcacaatctcccactgcctttgcaaccacctgctcatcctctctttggcatgctcatttcagtcatttctcctaaaaaattctcactcgaat |
31098706 |
T |
|
| Q |
409 |
gttgtctctcaacaaattttgataataaaaactctgtaatgtgtcatattnnnnnnnncatgaacttctattttccgtatgtccataaaaactagttgtc |
508 |
Q |
| |
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| T |
31098707 |
gttgtctctcaacaaattttgataataaaaactctgtaatgtgtcatattaaaaaaaacatgaacttctgttttctgtatgtccataaaaactagttgtc |
31098806 |
T |
|
| Q |
509 |
ctcttgaactca-tttttctgatgtttggagaccctctccaattaacactatcagtggatacaaatattatcttgtgttcgttgatcattttactagata |
607 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31098807 |
ctcttgaactcattttttctgatgtttggagaccctctccaattaacactatcagtggatacaaatattatcttgtgttcgttgatcattttactagata |
31098906 |
T |
|
| Q |
608 |
taaatggatttatcccctaaaaagtaaaattgatgcttcttacatttcccccaacttttcacaaaagttagaacatattttgcgcag-aattaaatccat |
706 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31098907 |
taaatggatttatcccctaaaaagtaaaattgacgcttcttccatttcccccaacttttcacaaaagttagaacatattttgcgcagaaattaaatccat |
31099006 |
T |
|
| Q |
707 |
ttacactgacagtggcattgaatatttcaaattaaaaccatacttaaaatcacatggaatatctcattacaccaattccccatatattcttgaacatatt |
806 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
31099007 |
ttacactgacagtggcattgaatatttcaaattaaaaccatacttaaaatcacatggaatatctcactacaccagttccccatatattcttgaacatatt |
31099106 |
T |
|
| Q |
807 |
ggcattgctgaacacaaacatcaccacttaacagaaacatatgtcactctctcatcgcactcttctgttccacaaaaattatggtgcttttccttttta |
905 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31099107 |
ggcattgctgaacacaaacatcaccacttaacagaaacatatgtcactctctcatcgcactcttctgttccacaaaaattatggtgcttttccttttta |
31099205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 642
Target Start/End: Original strand, 1701880 - 1701955
Alignment:
| Q |
567 |
tacaaatattatcttgtgttcgttgatcattttactagatataaatggatttatcccctaaaaagtaaaattgatg |
642 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||| ||||| |
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| T |
1701880 |
tacaaatattatcttgtgtttgttgatcattttactcgatattcttggatttatccgttaaaaagtaaaactgatg |
1701955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 1700833 - 1700908
Alignment:
| Q |
9 |
attcgcacatgtcaacacccctttgcttttgaggagcttcacagccatctacttgctcatgatgactaccttcgtc |
84 |
Q |
| |
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||||||||| | |||||||| ||| | |||||||||||||| |||||||| || || |||||||||||||| |||| |
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| T |
1700833 |
attcgcacacgccaacacccttttacctttgaggagcttcatagccatcttctcgcacatgatgactacctgcgtc |
1700908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 490 - 622
Target Start/End: Complemental strand, 26592636 - 26592503
Alignment:
| Q |
490 |
tccataaaaactagttgtcctcttgaactcatttt-tctgatgtttggagaccctctccaattaaca-ctatcagtggatacaaatattatcttgtgttc |
587 |
Q |
| |
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||||||||||||| || |||||| ||||| ||||| |||||||||||| |||| || || || |||| | || | ||| || | ||| ||||||||||| |
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| T |
26592636 |
tccataaaaactaattctcctctagaacttattttctctgatgtttggggaccatcccctat-aacatccattaatggttatagatactatcttgtgttt |
26592538 |
T |
|
| Q |
588 |
gttgatcattttactagatataaatggatttatcc |
622 |
Q |
| |
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||||| || ||||||||||||| |||||||||||| |
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| T |
26592537 |
gttgaccactttactagatatacatggatttatcc |
26592503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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