View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422R-Insertion-3 (Length: 633)
Name: NF1422R-Insertion-3
Description: NF1422R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422R-Insertion-3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 9 - 633
Target Start/End: Complemental strand, 45546703 - 45546079
Alignment:
| Q |
9 |
atgtggaaggggagaacgatgaacaaaactcacctaacgttgaaccatatccaggtatcatatcattttgtttgaagcaagagttaatatatactatact |
108 |
Q |
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| T |
45546703 |
atgtggaaggggagaacgatgaacaaaactcacctaacgttgaaccatatccaggtatcatatcattttgtttgaagcaagagttaatatatactatact |
45546604 |
T |
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| Q |
109 |
tggtagtttttaagtttgaagcannnnnnnctactttatttgaatctattttggatgcagtgacattgacacatggaccagaagagcccactgagcctga |
208 |
Q |
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| T |
45546603 |
tggtagtttttaagtttgaagcatttttttctactttatttgaatctattttggatgaagtgacactgacacatggaccagaagagcccactaattctga |
45546504 |
T |
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| Q |
209 |
gcctgagcctgagaagaagtctgttatgagtagggtgaaggcaaaggctaggaaagttagggacagtattaagaagcatggtcagaatgtatttgatcat |
308 |
Q |
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| T |
45546503 |
gcctgagcctgagaagaagtctgttatgagtagggtgaaggcaaaggctaggaaagttagggacagtattaagaagcatggtcagaatgtatttgatcat |
45546404 |
T |
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| Q |
309 |
ggtagtggacatgacactgaaactcagcatattcctgatgatgatggtgacttggatgaggataaaccaatagttcaagaccnnnnnnntcgtgaagtac |
408 |
Q |
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| T |
45546403 |
ggtagtggacatgacactgaaactcagcatattcctgatgatgatggtgacttggatgaggataaaccaatagttcaagaccaaaaaaatcgtgaagtac |
45546304 |
T |
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| Q |
409 |
caagtatgttcttttctacattctttatgcaattagattacgatagaattcaagggactactagtacatcccatattctcttgtggagtagaatctggca |
508 |
Q |
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| T |
45546303 |
caagtatgttcttttctacattctttatgcaattagattatgatagaattcaagggactactagtacatcccatattctcttgtgaagtagaatctggca |
45546204 |
T |
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| Q |
509 |
cttggttttagactataaatcattgacatagacatcagactagaaactgatataggactagacaccggtaataatttgagaaatagnnnnnnnttgaacg |
608 |
Q |
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| T |
45546203 |
cttggttttagactataaatcattgacatagacatcagactagacactgatataggactagacaccggtaataatttgagaaatggaaaaaaattgaacg |
45546104 |
T |
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| Q |
609 |
taatattatgtcccggtggcgtgtg |
633 |
Q |
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| T |
45546103 |
taataatatgtcccggtggcgtgtg |
45546079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 219 - 469
Target Start/End: Complemental strand, 45551732 - 45551487
Alignment:
| Q |
219 |
gagaagaagtctgttatgagtagggtgaaggcaaaggctaggaaagttagggacagtattaagaagcatggtcagaatgtatttgatcatggtagtggac |
318 |
Q |
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| T |
45551732 |
gagaagaaatctgttctgaataaggtgaaggcaaaggctaagaaaattaaggacacaattaaaaaacacggtcaacaagtacttgatcatggtaatggac |
45551633 |
T |
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| Q |
319 |
atgacactgaaactcagcatattcctgatgatgatggtgacttggatgaggataaaccaatagttcaagaccnnnnnnntcgtgaagtaccaagtatgtt |
418 |
Q |
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| T |
45551632 |
ataacaatgaaattcagcatactc---atgatgatatcgacttggatgaggataagcaactggttcaagacccacaagatcatcaagcaccaagtatgtt |
45551536 |
T |
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| Q |
419 |
cttttctacattctttatgcaattagattacgatagaattcaagggactac |
469 |
Q |
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| T |
45551535 |
cttttctacattatt--tgcaattagattatgctagaattcaagggactac |
45551487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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