View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422R-Insertion-4 (Length: 588)
Name: NF1422R-Insertion-4
Description: NF1422R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422R-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 8 - 588
Target Start/End: Original strand, 45684441 - 45685021
Alignment:
| Q |
8 |
agcaagtacgctacagtcatagatagcaatgctaataattctataatgcaaacattcatgaaataagaatcacaataatcaagattctcaaacaataaat |
107 |
Q |
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| T |
45684441 |
agcaagtacgctacagtcatagatagaaatgctaataattctataatgcaaacattaatgaaataagaatcacaataatcaagattctcaaataataaat |
45684540 |
T |
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| Q |
108 |
ccaaccgaccaaaagaaactgttagtgttggactacaacgagatccttaattggggtaatcaagtgccaaatatcacaacataatagttgttaaaattaa |
207 |
Q |
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| T |
45684541 |
ccaaccgaccaaaagaaactgttagtgttggactacaacgagatccttaattggggtaatcaagtgccaaatatcacaacataatagttgttaaaattaa |
45684640 |
T |
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| Q |
208 |
gtacaaaggcaagacataccataggaatgaaaatattgcctgttgtattttgtgctatgccttcatttatcagagataaaacttctggatgcaattttga |
307 |
Q |
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| T |
45684641 |
gtacaaaggcaagacataccttaggaatgaaaatattgcctgttgtattttgtgctatgccttcatttatcagagataaaacttctggatgcaattttga |
45684740 |
T |
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| Q |
308 |
cgagtcatctggtggatttaatttctccctcccaccagcatatgcctcaactacagtcatctacaattccaagatataagccactgtcacatcctgataa |
407 |
Q |
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| T |
45684741 |
cgagtcatctggtggatttaatttctccctcccaccagcatatgcctcaactacagtcatctacaattccaagatataagccactgtcacgtcctgataa |
45684840 |
T |
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| Q |
408 |
ttcaaggattctaaataaataaaagaaagaatgcatacagcaaggaccatggagtttggcagaataaacaaatagcttgtaagcctattagatatattaa |
507 |
Q |
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| T |
45684841 |
ttcaaggattctaaataaataaaagaaagaatgcatacagcaaggaccatggagtttggcagaataaacaaatagcttgtaagcctattagatatattaa |
45684940 |
T |
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| Q |
508 |
gcatgtaacaaaattatggacattgttaactagtttgtagctcattaggcattgggtgagtttcaatctttttctcttata |
588 |
Q |
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| T |
45684941 |
gcatgtaacaaaattatggacattgttaactagtttgtagctcattaggcattgggtgagtttcaatctttttctcttata |
45685021 |
T |
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Back To:
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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 252 - 327
Target Start/End: Complemental strand, 1441773 - 1441698
Alignment:
| Q |
252 |
gtattttgtgctatgccttcatttatcagagataaaacttctggatgcaattttgacgagtcatctggtggattta |
327 |
Q |
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| T |
1441773 |
gtattctgtgcaatgctttcatttatcagagataatgcttctggatggaactttgaagagtcatctggtggattta |
1441698 |
T |
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