View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422R-Insertion-5 (Length: 583)
Name: NF1422R-Insertion-5
Description: NF1422R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422R-Insertion-5 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 180 - 583
Target Start/End: Complemental strand, 30505406 - 30505011
Alignment:
| Q |
180 |
tatccctcttaaccattattattagcctgaatattgaaatgttaatttttatttgaaataaaaatgatagagatcggatgaatgtgatttggttagcata |
279 |
Q |
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| T |
30505406 |
tatccctcttaaccattattattagcctgaataatgaaatgttaatttttatttgaaattaaaatgatagagaa-ggattaatgtgatttgattagcata |
30505308 |
T |
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| Q |
280 |
aatggccacatcttctcctactaaaatgttacttcaacaaaattaacaacttctttcttctttttcatgttgctgaagtctaaaggtaaaccacttttga |
379 |
Q |
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| T |
30505307 |
aatggctacatcttctcctacaaaaatgttacttcaacaaaa----caacttctttcttctttttcatgttgctgaagtctaaaggtaaaccacttctga |
30505212 |
T |
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| Q |
380 |
tcatgttattcaatgaaaataaaatgtaaacttattagagttataagactcatcagaaattaagacaagaaatagttgagagcttatattgtatgtaata |
479 |
Q |
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| T |
30505211 |
tcatgttattcaatgaaaataaaatgtaaacttattggagttataagactcatcagaaattaagacaagaaat---tgagagcttatattgtatgcaata |
30505115 |
T |
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| Q |
480 |
tacctggcagtttctctggatgagtatagcagattccattttctccttcaagagtagggatgaactcatcaattagagggtgaagcttatgaatatctga |
579 |
Q |
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| T |
30505114 |
tacctggcagtttctctggatgagtatagcagattccattttctccttcaagagtagggatgaactcatcaattagagggtgaagcttatgaatatctga |
30505015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 512 - 576
Target Start/End: Complemental strand, 30512713 - 30512649
Alignment:
| Q |
512 |
attccattttctccttcaagagtagggatgaactcatcaattagagggtgaagcttatgaatatc |
576 |
Q |
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| T |
30512713 |
attccattctatccttcaagagttgggatgaactcgtcaattagagggtgaagcttatgaatatc |
30512649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 30505724 - 30505681
Alignment:
| Q |
8 |
aaatggcggatcaggccatctttgcttactcctgaagaaatata |
51 |
Q |
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| T |
30505724 |
aaatggcggatcagtccatctttgcttactcctgaagaaatata |
30505681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 30513044 - 30512965
Alignment:
| Q |
97 |
atatagtgaaaatagcttgctatatagaatgttatctaaggaagaaccacatataaatagataaataagaagctaggtacca |
178 |
Q |
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| T |
30513044 |
atatagtgaaaatagctttctacatataatgttatctaaggaggaactgaatat--atagataaataagaagttaggtacca |
30512965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 564
Target Start/End: Original strand, 34832254 - 34832337
Alignment:
| Q |
481 |
acctggcagtttctctggatgagtatagcagattccattttctccttcaagagtagggatgaactcatcaattagagggtgaag |
564 |
Q |
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| T |
34832254 |
acctggtagcttttctggatgtgtataacagattccgttctctccttcaagtgttggtatgaactcatcaataagaggatgaag |
34832337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 491 - 576
Target Start/End: Complemental strand, 38886696 - 38886611
Alignment:
| Q |
491 |
ttctctggatgagtatagcagattccattttctccttcaagagtagggatgaactcatcaattagagggtgaagcttatgaatatc |
576 |
Q |
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| T |
38886696 |
ttctctggatgagtacagcagattccattctctccttcaagagtagggatgaattcatcaattaaaggatgaagcatttgaatatc |
38886611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 564
Target Start/End: Original strand, 28950946 - 28951029
Alignment:
| Q |
481 |
acctggcagtttctctggatgagtatagcagattccattttctccttcaagagtagggatgaactcatcaattagagggtgaag |
564 |
Q |
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| T |
28950946 |
acctggtagcttttctggatgtgtataacagattccgttctctccttcaagtgttggtatgaactcatcaataagaggatgaag |
28951029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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