View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1422R-Insertion-8 (Length: 531)

Name: NF1422R-Insertion-8
Description: NF1422R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1422R-Insertion-8
NF1422R-Insertion-8
[»] chr4 (1 HSPs)
chr4 (8-188)||(24396527-24396707)
[»] chr7 (2 HSPs)
chr7 (393-499)||(7398156-7398261)
chr7 (396-502)||(26917977-26918086)
[»] chr8 (1 HSPs)
chr8 (402-461)||(30674701-30674760)
[»] chr6 (1 HSPs)
chr6 (396-502)||(4036789-4036894)
[»] chr1 (1 HSPs)
chr1 (404-500)||(39135020-39135117)
[»] chr2 (1 HSPs)
chr2 (396-455)||(13800853-13800912)
[»] chr5 (1 HSPs)
chr5 (404-502)||(15639168-15639266)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 24396527 - 24396707
Alignment:
Q  8 aatcacaactaaaagggttgcgtcgtttcctagtggaaaaagagaatgatatcttcatggccctcatgcaagatttagggaaacaccgtcttgaagcttt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24396527 aatcacaactaaaagggttgcgtcgtttcctagtggaaaaagagaatgatatcttcatggccctcatgcaagatttagggaaacaccgtcttgaagcttt 24396626  T
Q  108 tagagatgaggtatttctaaaccctacatatatataatttcttcaagttatgtagacatattttcgaatccaaggaatgca 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24396627 tagagatgaggtatttctaaaccctacatatatataatttcttcaagttatgtagacatattttcgaatccaaggaatgca 24396707  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 393 - 499
Target Start/End: Original strand, 7398156 - 7398261
Alignment:
Q  393 caaggtcggatcttggggtgtgcaaaaagttcaatggagctgagtctctccaagatatgagccaaaaaagaaaattatagcccagtaatacgacttagta 492  Q
    |||||||||| ||||||||||||||  || |||||||||||||| ||| ||||| |||| ||| ||| | ||| ||||||||||||| ||| ||| ||||    
T  7398156 caaggtcggaccttggggtgtgcaacgagctcaatggagctgagcctccccaaggtatgggcctaaata-aaatttatagcccagtagtactactaagta 7398254  T
Q  493 ctacccc 499  Q
    |||||||    
T  7398255 ctacccc 7398261  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 396 - 502
Target Start/End: Complemental strand, 26918086 - 26917977
Alignment:
Q  396 ggtcggatcttggggtgtgcaaaaagttcaatggagctgagtctctccaagatatgagcc---aaaaaagaaaattatagcccagtaatacgacttagta 492  Q
    |||||||| || ||||||||||| || |||||||||||| |  |||| ||| |||||| |   |||||| ||||||||||| ||||| ||| ||| ||||    
T  26918086 ggtcggattttagggtgtgcaaagagctcaatggagctgggcatctctaaggtatgagtctaaaaaaaaaaaaattatagctcagtagtactactaagta 26917987  T
Q  493 ctaccccact 502  Q
    ||||||||||    
T  26917986 ctaccccact 26917977  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 461
Target Start/End: Complemental strand, 30674760 - 30674701
Alignment:
Q  402 atcttggggtgtgcaaaaagttcaatggagctgagtctctccaagatatgagccaaaaaa 461  Q
    |||||||||||| ||||||| |||||||| ||| |||||||||||||||||||| |||||    
T  30674760 atcttggggtgtacaaaaagctcaatggaactgggtctctccaagatatgagcctaaaaa 30674701  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 396 - 502
Target Start/End: Original strand, 4036789 - 4036894
Alignment:
Q  396 ggtcggatcttggggtgtgcaaaaagttcaatggagctgagtctctccaagatatgagccaaaaaagaaaattatagcccagtaatacgacttagtacta 495  Q
    ||||||| |||||||||||||||| | ||||||||| || | ||| ||||  ||||||||  |||| ||||||||||||||||| ||| ||| |||||||    
T  4036789 ggtcggaccttggggtgtgcaaaacgctcaatggagttgggcctccccaatgtatgagcctcaaaa-aaaattatagcccagtagtactactaagtacta 4036887  T
Q  496 ccccact 502  Q
     ||||||    
T  4036888 tcccact 4036894  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 500
Target Start/End: Complemental strand, 39135117 - 39135020
Alignment:
Q  404 cttggggtgtgcaaaaagttcaatggagctgagtctctccaagatatgagcca-aaaaagaaaattatagcccagtaatacgacttagtactacccca 500  Q
    ||||||||||||||| || |||||||| ||| | ||| ||||| |||| |||  ||||| ||||||||||||||||| ||| ||| ||||||||||||    
T  39135117 cttggggtgtgcaaagagctcaatggaactgggcctccccaaggtatgggcctcaaaaacaaaattatagcccagtagtactactaagtactacccca 39135020  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 396 - 455
Target Start/End: Complemental strand, 13800912 - 13800853
Alignment:
Q  396 ggtcggatcttggggtgtgcaaaaagttcaatggagctgagtctctccaagatatgagcc 455  Q
    ||||||| |||||||||||||||||| ||||||||| || |||| |||||| ||||||||    
T  13800912 ggtcggaccttggggtgtgcaaaaagctcaatggagttgggtctttccaaggtatgagcc 13800853  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 502
Target Start/End: Original strand, 15639168 - 15639266
Alignment:
Q  404 cttggggtgtgcaaaaagttcaatggagctgagtctctccaagatatgagccaaaaaagaaaattatagcccagtaatacgacttagtactaccccact 502  Q
    |||| |||||||||  || |||||||| |||   ||| ||||| |||| ||| ||||| |||||||||| |||||| ||| ||| ||||||||||||||    
T  15639168 cttgaggtgtgcaaggagctcaatggaactggagctccccaaggtatgggcctaaaaaaaaaattatagtccagtagtactactaagtactaccccact 15639266  T

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