View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422R-Insertion-9 (Length: 463)
Name: NF1422R-Insertion-9
Description: NF1422R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422R-Insertion-9 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 463
Target Start/End: Complemental strand, 8964486 - 8964027
Alignment:
| Q |
9 |
gatctctcgcccaataaactttcttaatcttgtttcaaagaatctgccaccatattttttccaacaaagtgcactagtaatgtattcttccaaggtgcac |
108 |
Q |
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| T |
8964486 |
gatctctcgcccaataaactttcttaatcttgtttcaaagaatctgccaccatattttttccaacaaagtgcactagtaatgtcttcttccaaggtgcac |
8964387 |
T |
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| Q |
109 |
ataaagattaaactcatatagtacttacattattccaaaacttgnnnnnnnn-accattaaccaccactaaccatgcatttggatttcaaccatagtaac |
207 |
Q |
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| T |
8964386 |
atcaagattaaactcaaatagtacttacattattccaatacttgtttttttttaccattaaccaccactaaccatgcatttggatttgaaccatagtaac |
8964287 |
T |
|
| Q |
208 |
ctt------atcctttaagaaattttattatttttatatcannnnnnnnnggaacaaacttataacatttcattagaaatcaaggtataactatatgacg |
301 |
Q |
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| T |
8964286 |
cttgtccttatcctttaagaaattttattatttttatattattttttt--ggaacaaacttataacatttcattagaaatcaaggtataactacatgatg |
8964189 |
T |
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| Q |
302 |
gtgcatcaataaacaagtgggagctagcataaaatgacgatatcttattcaagtctgagtgacccagtgacttaccatcgattaaactcgacattagagt |
401 |
Q |
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| T |
8964188 |
gtgcatcaataaacaagtgggagctagcataaaatgacgatattttattcaagtctgagcgacctagtgacttgccttcgattaaactcgacattagagt |
8964089 |
T |
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| Q |
402 |
tttgaatattaacattaaacaattgttcacaaacattcataatactaccaaatccagtaata |
463 |
Q |
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| T |
8964088 |
tttgaatattaacattaaacaattgttcacaaacattcataatactaccaaattcaataata |
8964027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 8955899 - 8956012
Alignment:
| Q |
9 |
gatctctcgcccaataaactttcttaatcttgtttcaaagaatctgccaccatattttttccaacaaagtgcactagtaatgtattcttccaaggtgcac |
108 |
Q |
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| T |
8955899 |
gatctctcgcccaataaactttcttaatcttgtttcaaagaatttgccaccatattttttccagcaaagtgcactagtaatgtattcttccaaggtgcac |
8955998 |
T |
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| Q |
109 |
ataaagattaaact |
122 |
Q |
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|| |||||| |||| |
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| T |
8955999 |
atcaagatttaact |
8956012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 199 - 452
Target Start/End: Complemental strand, 8995116 - 8994863
Alignment:
| Q |
199 |
catagtaaccttatcctttaagaaattttattatttttatatcannnnnnnnnggaa-caaacttataacatttcattagaaatcaaggtataactatat |
297 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||| | || | |||||| |||||||||||||||||||||||||| || || || |
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| T |
8995116 |
catagtaaccttatcctttaagaatttttattttttttatataattttttcaggggagcaaactaataacatttcattagaaatcaaggtacaaatacat |
8995017 |
T |
|
| Q |
298 |
gacggtgcatcaataaacaagtgggagctagcataaaatgacgatatcttattcaagtctgagtgacccagtgacttaccatcgattaaactcgacatta |
397 |
Q |
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|| ||| ||||||||||||||||| |||||||||||||||| |||| ||| ||| || || ||||| |||||| || || ||||| ||||||| | |
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| T |
8995016 |
gatggtacatcaataaacaagtggaagctagcataaaatgatgataccttcgctaagact-agcaacccactgacttgcctccgtttaaattcgacatga |
8994918 |
T |
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| Q |
398 |
gagttttgaatattaacattaaacaattgttcacaaacattcataatactaccaa |
452 |
Q |
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| T |
8994917 |
gagttttgaatattaacattaaacaacaattcacaaacattcataatactaccaa |
8994863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 199 - 452
Target Start/End: Complemental strand, 9019563 - 9019310
Alignment:
| Q |
199 |
catagtaaccttatcctttaagaaattttattatttttatatcannnnnnnnnggaa-caaacttataacatttcattagaaatcaaggtataactatat |
297 |
Q |
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| T |
9019563 |
catagtaaccttatcctttaagaatttttattttttttatataattttttcaggggagcaaactaataacatttcattagaaatcaaggtacaaatacat |
9019464 |
T |
|
| Q |
298 |
gacggtgcatcaataaacaagtgggagctagcataaaatgacgatatcttattcaagtctgagtgacccagtgacttaccatcgattaaactcgacatta |
397 |
Q |
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|| ||| ||||||||||||||||| |||||||||||||||| |||| ||| ||| || || ||||| |||||| || || ||||| ||||||| | |
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| T |
9019463 |
gatggtacatcaataaacaagtggaagctagcataaaatgatgataccttcgctaagact-agcaacccactgacttgcctccgtttaaattcgacatga |
9019365 |
T |
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| Q |
398 |
gagttttgaatattaacattaaacaattgttcacaaacattcataatactaccaa |
452 |
Q |
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| T |
9019364 |
gagttttgaatattaacattaaacaacaattcacaaacattcataatactaccaa |
9019310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 462
Target Start/End: Complemental strand, 8991389 - 8991310
Alignment:
| Q |
383 |
ttaaactcgacattagagttttgaatattaacattaaacaattgttcacaaacattcataatactaccaaatccagtaat |
462 |
Q |
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| T |
8991389 |
ttaaactcgacatgatagttttgaaaactaacattcaataactattcacaaacattcataatgctaccaaattcagtaat |
8991310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 462
Target Start/End: Complemental strand, 9015836 - 9015757
Alignment:
| Q |
383 |
ttaaactcgacattagagttttgaatattaacattaaacaattgttcacaaacattcataatactaccaaatccagtaat |
462 |
Q |
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| T |
9015836 |
ttaaactcgacatgatagttttgaaaactaacattcaataactattcacaaacattcataatgctaccaaattcagtaat |
9015757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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