View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_high_14 (Length: 364)
Name: NF1422_high_14
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 39524322 - 39524512
Alignment:
| Q |
10 |
gcagagacgccatttttagggttttaggagaaggaacgtgaagaaggttggaagggatggtaacaatcgttacaaaggggttttagttttggaatagact |
109 |
Q |
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| T |
39524322 |
gcagagacgccatttttagggttttaggagaaggaacgtgaagaaggttggaagggatgggaacaatcgttacaaaggagttttagttttggaatagact |
39524421 |
T |
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| Q |
110 |
tgcctacagtaccatacacacagttcttactgttcccctatcacagcaacaagccacgtgtattaaaattctctctcttgcgtaggtttaa |
200 |
Q |
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| T |
39524422 |
tgcctacagtaccatacacacagttcttactgttcccctatcacaacaacaagccacgtgtattaaaattctctctcttgcgtaggtttaa |
39524512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 233 - 356
Target Start/End: Original strand, 39525679 - 39525800
Alignment:
| Q |
233 |
ggttaaaccgttataaaacctacgagaatcaaataaaattgaaaaatctatgagaaatcgggaaatgaaaagctaggagaatggttgtttacgggagttt |
332 |
Q |
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| T |
39525679 |
ggttaaaccgttataaaacctacgagaatcaaataaaattgaaaaatct--gagaaatcgggaagtgaaaagctaggagaatggttgtttacgggagttt |
39525776 |
T |
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| Q |
333 |
tggaggatcgatgtttgtgatgat |
356 |
Q |
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| T |
39525777 |
tggaggattgatgtttgtgatgat |
39525800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 41215713 - 41215761
Alignment:
| Q |
309 |
gagaatggttgtttacgggagttttggagga-tcgatgtttgtgatgat |
356 |
Q |
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| T |
41215713 |
gagaatggttgcttacgggagttttggaggatttgatgtttgtgatgat |
41215761 |
T |
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