View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1422_high_26 (Length: 280)

Name: NF1422_high_26
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1422_high_26
NF1422_high_26
[»] chr8 (8 HSPs)
chr8 (11-256)||(42445781-42446031)
chr8 (16-93)||(15837171-15837248)
chr8 (15-91)||(28300118-28300194)
chr8 (15-109)||(12959738-12959832)
chr8 (52-110)||(19756410-19756468)
chr8 (38-110)||(1028771-1028843)
chr8 (65-104)||(13147732-13147771)
chr8 (185-219)||(42446014-42446048)
[»] scaffold0166 (1 HSPs)
scaffold0166 (11-110)||(35884-35983)
[»] chr5 (8 HSPs)
chr5 (11-110)||(24793501-24793600)
chr5 (46-110)||(15409214-15409278)
chr5 (11-103)||(30327682-30327774)
chr5 (12-108)||(28282363-28282459)
chr5 (18-93)||(8032893-8032968)
chr5 (13-87)||(31478693-31478767)
chr5 (38-116)||(43405980-43406058)
chr5 (65-110)||(43549057-43549102)
[»] chr3 (10 HSPs)
chr3 (15-110)||(38745275-38745370)
chr3 (10-116)||(41259929-41260035)
chr3 (38-104)||(51829545-51829611)
chr3 (52-113)||(11988910-11988971)
chr3 (21-86)||(27100918-27100983)
chr3 (50-110)||(52910370-52910430)
chr3 (11-110)||(21892505-21892603)
chr3 (11-93)||(33440003-33440085)
chr3 (49-117)||(36786546-36786616)
chr3 (56-93)||(6757309-6757346)
[»] chr2 (11 HSPs)
chr2 (15-110)||(34319797-34319892)
chr2 (15-110)||(37123587-37123682)
chr2 (15-110)||(31068875-31068970)
chr2 (15-116)||(14368392-14368493)
chr2 (18-90)||(44287825-44287897)
chr2 (11-113)||(8915591-8915693)
chr2 (65-117)||(20156985-20157039)
chr2 (63-110)||(32087325-32087372)
chr2 (65-117)||(34028170-34028223)
chr2 (38-110)||(23948684-23948753)
chr2 (37-86)||(9932020-9932069)
[»] chr4 (16 HSPs)
chr4 (11-110)||(35010365-35010464)
chr4 (11-103)||(31351662-31351754)
chr4 (65-110)||(54733259-54733304)
chr4 (11-106)||(13538241-13538336)
chr4 (38-110)||(28091311-28091383)
chr4 (15-110)||(23894267-23894362)
chr4 (11-104)||(9460189-9460281)
chr4 (15-110)||(50263972-50264067)
chr4 (15-93)||(38415494-38415572)
chr4 (11-91)||(35130612-35130692)
chr4 (15-110)||(17882227-17882320)
chr4 (11-110)||(42657529-42657628)
chr4 (11-110)||(49479483-49479582)
chr4 (16-110)||(39790110-39790203)
chr4 (16-93)||(10601898-10601975)
chr4 (49-105)||(7921649-7921705)
[»] chr6 (10 HSPs)
chr6 (15-109)||(12606681-12606775)
chr6 (16-93)||(6922633-6922710)
chr6 (15-110)||(7326313-7326408)
chr6 (38-110)||(12654479-12654551)
chr6 (49-110)||(5925646-5925707)
chr6 (38-110)||(2994767-2994839)
chr6 (11-93)||(7339523-7339604)
chr6 (36-85)||(21023693-21023742)
chr6 (49-94)||(24896867-24896912)
chr6 (24-60)||(20716412-20716448)
[»] chr7 (17 HSPs)
chr7 (11-110)||(27227246-27227345)
chr7 (15-110)||(23982046-23982141)
chr7 (12-93)||(37307687-37307768)
chr7 (11-106)||(9667217-9667312)
chr7 (15-110)||(25091192-25091286)
chr7 (11-110)||(27744606-27744704)
chr7 (12-110)||(45725105-45725203)
chr7 (16-110)||(32958521-32958615)
chr7 (15-117)||(47684462-47684564)
chr7 (15-93)||(23198524-23198601)
chr7 (65-110)||(7683459-7683504)
chr7 (49-93)||(24250145-24250189)
chr7 (29-93)||(45967360-45967424)
chr7 (65-117)||(40097889-40097943)
chr7 (15-110)||(41780491-41780585)
chr7 (38-88)||(13054649-13054699)
chr7 (53-106)||(44165873-44165925)
[»] scaffold0291 (1 HSPs)
scaffold0291 (15-110)||(7203-7298)
[»] scaffold0178 (1 HSPs)
scaffold0178 (49-92)||(9703-9746)
[»] chr1 (4 HSPs)
chr1 (49-110)||(8757256-8757317)
chr1 (65-117)||(1927618-1927672)
chr1 (40-93)||(2098801-2098854)
chr1 (49-94)||(2661631-2661676)


Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 42445781 - 42446031
Alignment:
Q  11 cagagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||||||||| || ||||||| |||||||||   |||  ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  42445781 cagagataatttgtgcagcggtcagggttcgaactctgaattatccacttttctacacataatgtgtgtgaatctagccactaaactacttgaaaaaaaa 42445880  T
Q  111 taataa---tttacacgcatgtaaatcagggtcatagtaacaagtgcttagaagcactag--ccctaaacacatacaagtaagttttatgtaaatcaggg 205  Q
     || ||   |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||  ||||||||||||||||||||||||||||||    
T  42445881 aaaaaagaatttacacgcatgtaaatcagggtcatagtaacaagtgcttagaagcactagtgccctaagtacatacaagtaagttttatgtaaatcaggg 42445980  T
Q  206 tcatactaacaagtgcgaagaagcattaataactaagttttatgtaaacca 256  Q
    ||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  42445981 tcacactaacaagtgcgaagaagcattaataattaagttttatgtaaacca 42446031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 15837171 - 15837248
Alignment:
Q  16 ataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccacta 93  Q
    |||||||||| ||||||| || |||||||||  ||||||||| ||||| |||||||||||||||||||| ||||||||    
T  15837171 ataatttgtgcaggggtcggggttcgaactctggattccccatttttccacacataatgtgtgtgaatccagccacta 15837248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 28300118 - 28300194
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccac 91  Q
    ||||||||||| ||||| | || ||||||| || |||||||||||| || | |||||||||||||||||||||||||    
T  28300118 gataatttgtgcaggggccggggttcgaaccccggattccccacttctccatacataatgtgtgtgaatctagccac 28300194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 12959738 - 12959832
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaa 109  Q
    ||||| ||||| ||||||  || ||||||| ||||||||||||||| |   || ||||||||||||||||||||||| || || |||||||||||    
T  12959738 gataacttgtgcaggggttggggttcgaaccccagattccccacttattcgcatataatgtgtgtgaatctagccacgaagctacttgacaaaaa 12959832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 19756468 - 19756410
Alignment:
Q  52 tccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||| || |||||||||||||||||||||||||||||  || | ||||||||||    
T  19756468 tccccacttctccacacataatgtgtgtgaatctagccactaggctacctgacaaaaaa 19756410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 1028771 - 1028843
Alignment:
Q  38 ttcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    |||||||||| |||||  ||||| |  | ||||||||||||||||||||||||||| ||| | ||||||||||    
T  1028771 ttcgaactccggattcttcacttcttcatacataatgtgtgtgaatctagccactagactacctgacaaaaaa 1028843  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 13147771 - 13147732
Alignment:
Q  65 acacataatgtgtgtgaatctagccactaaactgcttgac 104  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  13147771 acacataatgtgtgtgaatctagccactagactacttgac 13147732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 42446014 - 42446048
Alignment:
Q  185 taagttttatgtaaatcagggtcatactaacaagt 219  Q
    ||||||||||||||| |||||||||||||||||||    
T  42446014 taagttttatgtaaaccagggtcatactaacaagt 42446048  T

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Target: scaffold0166 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 35884 - 35983
Alignment:
Q  11 cagagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||||||||| ||||||| || | ||||| ||||||| |||| || |||||||||||||| ||||||||||||||||| ||| ||||||||||||    
T  35884 cagagataatttgtgcaggggtcggggtccgaaccccagatttcccatttctctacacataatgtatgtgaatctagccactagactacttgacaaaaaa 35983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 24793501 - 24793600
Alignment:
Q  11 cagagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||||||||| ||||||| || | ||||| ||||||| |||| || |||||||||||||| ||||||||||||||||| ||| ||||||||||||    
T  24793501 cagagataatttgtgcaggggtcggggtccgaaccccagatttcccatttctctacacataatgtatgtgaatctagccactagactacttgacaaaaaa 24793600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 15409214 - 15409278
Alignment:
Q  46 ccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||||||||| | |||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  15409214 ccagattccccacttctttacacataatgtgtgtgaatttagccactagactacttgacaaaaaa 15409278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 30327682 - 30327774
Alignment:
Q  11 cagagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttga 103  Q
    |||||||||||| || ||||| | || ||||||| ||  |||| |||||| || ||||||||| ||||||||||||||||||||||| |||||    
T  30327682 cagagataatttatgcaggggccggggttcgaaccccgaattcgccacttctccacacataatatgtgtgaatctagccactaaactacttga 30327774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 28282363 - 28282459
Alignment:
Q  12 agagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaa 108  Q
    |||||||||||||| |||||||  ||||| |||  |  ||||| ||||| || ||||||||| |||||||||||| |||||| ||| ||||||||||    
T  28282363 agagataatttgtggaggggtcgagattcaaacctcgtattcctcacttctccacacataatatgtgtgaatctaaccactagactacttgacaaaa 28282459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 8032893 - 8032968
Alignment:
Q  18 aatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccacta 93  Q
    |||||||| ||||||  |||||||||| ||| |||| |||| | || ||||||||||||||||||| |||||||||    
T  8032893 aatttgtgcaggggttgggattcgaaccccaaattctccacatctccacacataatgtgtgtgaatttagccacta 8032968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 31478767 - 31478693
Alignment:
Q  13 gagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctag 87  Q
    ||||||||||||| | ||| | |  |||||||| | ||||| |||||| ||||||||||||||||||||||||||    
T  31478767 gagataatttgtgcaagggccggagttcgaacttcggattctccacttctctacacataatgtgtgtgaatctag 31478693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 43406058 - 43405980
Alignment:
Q  38 ttcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaataataa 116  Q
    |||||||  ||||||| |||||| || ||||||||||||||||| |||| |||||| |||  ||||||||||| |||||    
T  43406058 ttcgaacctcagattctccacttctccacacataatgtgtgtgagtctaaccactagactaattgacaaaaaaaaataa 43405980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 43549102 - 43549057
Alignment:
Q  65 acacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    |||||| || |||||||||||||||||||| || ||||||||||||    
T  43549102 acacatgatatgtgtgaatctagccactaagctacttgacaaaaaa 43549057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 38745370 - 38745275
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||||| ||||||| |||||||||| ||  ||||||||||| || ||||| ||||||||||||||||||||||| ||| ||||||||||||    
T  38745370 gataatttgtgcaggggtcgggattcgaaccccgaattccccacttctccacacaaaatgtgtgtgaatctagccactagactacttgacaaaaaa 38745275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 41260035 - 41259929
Alignment:
Q  10 gcagagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaa 109  Q
    |||| ||||||||||||||||| | || ||||| | ||  ||||||||||| || |||||||||||||||||||||||||||||  || |||||| ||||    
T  41260035 gcagggataatttgtgtaggggccggggttcgacccccgaattccccacttctccacacataatgtgtgtgaatctagccactaggctacttgactaaaa 41259936  T
Q  110 ataataa 116  Q
    | |||||    
T  41259935 aaaataa 41259929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 51829611 - 51829545
Alignment:
Q  38 ttcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgac 104  Q
    ||||||| ||||||||| ||||| || ||||||||||| ||||||||||||||||| ||| ||||||    
T  51829611 ttcgaaccccagattcctcacttctccacacataatgtatgtgaatctagccactatactacttgac 51829545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 11988971 - 11988910
Alignment:
Q  52 tccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaataa 113  Q
    ||||||||| || ||||||||||||||||||||||||||||| |||  ||||| ||||||||    
T  11988971 tccccacttctccacacataatgtgtgtgaatctagccactagactaattgaccaaaaataa 11988910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 27100983 - 27100918
Alignment:
Q  21 ttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatcta 86  Q
    ||||| |||| || || ||||||||||||||| |||||||||| ||||||||||||| | ||||||    
T  27100983 ttgtgcagggatcggggttcgaactccagatttcccacttttccacacataatgtgtttaaatcta 27100918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 52910430 - 52910370
Alignment:
Q  50 attccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||||| || ||||||||||||||||||||||| ||||| ||| | ||| ||||||    
T  52910430 attccccacttctccacacataatgtgtgtgaatctagtcactagactacctgataaaaaa 52910370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 21892603 - 21892505
Alignment:
Q  11 cagagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    |||||||||||| || |||| || || ||||||| ||| ||||||||||| || |||| || | ||||||||||||||  ||||||| ||||| ||||||    
T  21892603 cagagataatttatggagggatcggggttcgaac-ccaaattccccacttctccacacttattatgtgtgaatctagctgctaaactacttgataaaaaa 21892505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 33440003 - 33440085
Alignment:
Q  11 cagagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccacta 93  Q
    |||| |||||||||||||||||| || || ||| |||  |||  |||| |||  |||||||||||||||||||||| ||||||    
T  33440003 cagaaataatttgtgtaggggtcggggtttgaattccgaattttccaccttttcacacataatgtgtgtgaatctaaccacta 33440085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 36786616 - 36786546
Alignment:
Q  49 gattcccca-cttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaa-aataataat 117  Q
    ||||||||| ||| || ||||||||| |||||||||||||||||| ||||  ||||||||| |||||||||    
T  36786616 gattccccaacttctccacacataatatgtgtgaatctagccactgaactatttgacaaaataataataat 36786546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 6757309 - 6757346
Alignment:
Q  56 cacttttctacacataatgtgtgtgaatctagccacta 93  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  6757309 cacttttccacacataatgtgtgtaaatctagccacta 6757346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 34319892 - 34319797
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||||| ||||| |||||||| ||| |  |||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  34319892 gataatttgtgcaggggccaggattctaaccctggattcctcacttctctacacataatgtgtgtgaatctagccactagactacttgacaaaaaa 34319797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 37123587 - 37123682
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    |||||||||||||||| || |||||||||| ||| ||| | ||||| || ||||||||||||||||||||||||||||| ||| ||||| ||||||    
T  37123587 gataatttgtgtagggttcgggattcgaaccccaaatttctcacttctccacacataatgtgtgtgaatctagccactagactacttgataaaaaa 37123682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 31068970 - 31068875
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||||||||||||| |  || ||||||| |||||||||||| || |||| ||||||||||||||||| |||||| |||  |||||||||||    
T  31068970 gataatttgtgtaggggtcggagtttgaactccggattccccacttctccacacttaatgtgtgtgaatctaaccactagactatttgacaaaaaa 31068875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 14368493 - 14368392
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaataat 114  Q
    |||||||| | |||||||  || |||||||  | |||||||||||| || |||||||||||||||||||||||||||||||||  |||| |||||| |||    
T  14368493 gataatttatataggggttggggttcgaaccacggattccccacttctccacacataatgtgtgtgaatctagccactaaactatttgataaaaaaaaat 14368394  T
Q  115 aa 116  Q
    ||    
T  14368393 aa 14368392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 44287825 - 44287897
Alignment:
Q  18 aatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagcca 90  Q
    |||||||| || |||  ||||||||||||| |||||||||||| || ||||||||||||||||||||||||||    
T  44287825 aatttgtgcagaggttgggattcgaactccggattccccacttctccacacataatgtgtgtgaatctagcca 44287897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 8915591 - 8915693
Alignment:
Q  11 cagagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    |||| |||||||||| | ||||  || |||| || || |||||||||||| || | | ||||||||||||||||||||||||| ||  ||||||||||||    
T  8915591 cagaaataatttgtgaatgggttggggttcgtaccccggattccccacttctccataaataatgtgtgtgaatctagccactagaccacttgacaaaaaa 8915690  T
Q  111 taa 113  Q
    |||    
T  8915691 taa 8915693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 20156985 - 20157039
Alignment:
Q  65 acacataatgtgtgtgaatctagccactaaactgcttgac--aaaaaataataat 117  Q
    ||||||||||||||||||||||| ||||||||| ||||||  |||||||||||||    
T  20156985 acacataatgtgtgtgaatctagacactaaactacttgacgaaaaaaataataat 20157039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 32087372 - 32087325
Alignment:
Q  63 ctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||||||||||||||||||||||||||  | ||||||||||||    
T  32087372 ctacacataatgtgtgtgaatctagccactaagttacttgacaaaaaa 32087325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 34028170 - 34028223
Alignment:
Q  65 acacataatgtgtgtgaatctagccactaaactgcttgac-aaaaaataataat 117  Q
    |||||||||||||||||||||| ||| |||||| |||||| |||||||||||||    
T  34028170 acacataatgtgtgtgaatctaaccattaaactacttgacgaaaaaataataat 34028223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 23948753 - 23948684
Alignment:
Q  38 ttcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||| || ||||||||||||    |||||||||||||||||||| ||||||||  || ||||||||||||    
T  23948753 ttcgaaccccggattccccacttc---acacataatgtgtgtgaatcaagccactaggctacttgacaaaaaa 23948684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 9932069 - 9932020
Alignment:
Q  37 attcgaactccagattccccacttttctacacataatgtgtgtgaatcta 86  Q
    |||||||| || |||||||||||| || ||| ||||||||||||||||||    
T  9932069 attcgaaccccggattccccacttctccacatataatgtgtgtgaatcta 9932020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 35010464 - 35010365
Alignment:
Q  11 cagagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||||||||| ||| ||| || |||||||||| |||| ||||||| || ||||||||||||| |||||||||||||||  || ||||||||||||    
T  35010464 cagagataatttgtgcaggagtcggggttcgaactccggatttcccacttctccacacataatgtgtatgaatctagccactatgctacttgacaaaaaa 35010365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 31351754 - 31351662
Alignment:
Q  11 cagagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttga 103  Q
    ||||||||||||||| ||||||| || |||||||||| |||| |||| || || ||||||||| ||||||||||||||||||| ||| |||||    
T  31351754 cagagataatttgtgcaggggtcggggttcgaactccggatttcccatttctccacacataatatgtgtgaatctagccactagactacttga 31351662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 54733304 - 54733259
Alignment:
Q  65 acacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  54733304 acacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 54733259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 13538336 - 13538241
Alignment:
Q  11 cagagataatttgtgtaggggtcagga-ttcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaa 106  Q
    ||||||||||||||||||||| | ||| ||||||| ||| ||| ||||||| || | ||||||||||||||||||||||||||| ||| ||||||||    
T  13538336 cagagataatttgtgtagggg-ctggagttcgaaccccaaatttcccacttctccatacataatgtgtgtgaatctagccactagactacttgacaa 13538241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 28091383 - 28091311
Alignment:
Q  38 ttcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||||| ||||||||||| || |||||||||||||||||||||||| | || ||| ||||||||||||    
T  28091383 ttcgaactccaaattccccacttctccacacataatgtgtgtgaatctagcaattagactacttgacaaaaaa 28091311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 23894362 - 23894267
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    |||||||||||||||| | ||| |||||||  |||||| || |||| |||| |||||||||||||||||||  |||||| ||| ||||||||||||    
T  23894362 gataatttgtgtagggtttagggttcgaacctcagatttcctacttctctatacataatgtgtgtgaatctgaccactagactacttgacaaaaaa 23894267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 9460189 - 9460281
Alignment:
Q  11 cagagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgac 104  Q
    |||||||||||||||||||| || || ||| ||  ||| |||||||| || || ||||||||||||||||||| ||||||||||||| ||||||    
T  9460189 cagagataatttgtgtaggg-tcggggttcaaatcccatattccccatttctccacacataatgtgtgtgaatatagccactaaactacttgac 9460281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 50264067 - 50263972
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||||| ||||| | ||  |||||  || |||||||||||| || |||||| ||||||||||||||||||||||  || ||||||||||||    
T  50264067 gataatttgtgcaggggccggggctcgaaacccggattccccacttctccacacatgatgtgtgtgaatctagccactaggctacttgacaaaaaa 50263972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 38415572 - 38415494
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccacta 93  Q
    ||||||||||| || ||||||||||||||| ||| |||| ||| || |  | |||||||||||||||||||||||||||    
T  38415572 gataatttgtgcagaggtcaggattcgaaccccaaattctccatttcttcatacataatgtgtgtgaatctagccacta 38415494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 35130692 - 35130612
Alignment:
Q  11 cagagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccac 91  Q
    ||||||||||||||| ||||| | || ||||||| || |||| ||||||| |  |||||| ||||||||||||||||||||    
T  35130692 cagagataatttgtgcaggggccggggttcgaaccccggatttcccacttcttcacacattatgtgtgtgaatctagccac 35130612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 17882320 - 17882227
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||||| ||||| |||| ||||||| || ||||| | |||| || | ||||||||||||| ||||||||||||| ||| ||||||||||||    
T  17882320 gataatttgtgcagggg-cagggttcgaaccccggattctctacttctcca-acataatgtgtgtaaatctagccactagactacttgacaaaaaa 17882227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 42657529 - 42657628
Alignment:
Q  11 cagagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    |||||||||||| | |||||||| |  ||||||| ||| |||| |||||| |  ||||||||||||||||||| || |||||||||| ||| | ||||||    
T  42657529 cagagataatttatataggggtcggagttcgaaccccacattctccacttcttcacacataatgtgtgtgaatttaaccactaaactacttaaaaaaaaa 42657628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 49479483 - 49479582
Alignment:
Q  11 cagagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    |||| ||||||| |||||||||  || ||||||  ||  ||| || |||| || |||||||||||||||||||||| |||||| ||| ||||||||||||    
T  49479483 cagaaataatttatgtaggggtaggggttcgaatcccgaatttccaacttctccacacataatgtgtgtgaatctaaccactagactacttgacaaaaaa 49479582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 39790110 - 39790203
Alignment:
Q  16 ataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    |||||||||||||||||| |  |||||| |||||||||||||||| |  ||| || ||  |||||||||||| ||||| ||| ||||||||||||    
T  39790110 ataatttgtgtaggggtcggtgttcgaa-tccagattccccacttcttcacatattatacgtgtgaatctagtcactatactacttgacaaaaaa 39790203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 10601898 - 10601975
Alignment:
Q  16 ataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccacta 93  Q
    ||||||| || | ||||| || || |||| ||||||||||||||| |||||||||||| ||||||||| | |||||||    
T  10601898 ataatttttgcaagggtcggggtttgaaccccagattccccacttctctacacataatatgtgtgaatatggccacta 10601975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 7921649 - 7921705
Alignment:
Q  49 gattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgaca 105  Q
    |||||| ||||| || |||||| |||||||||||| ||||||||| ||| |||||||    
T  7921649 gattcctcacttctccacacatcatgtgtgtgaatttagccactagactacttgaca 7921705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 12606681 - 12606775
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaa 109  Q
    |||||||||||||||  ||  | ||||||| ||||||||||||||| |  ||| ||||||||||||||||||||||||||||||||||| |||||    
T  12606681 gataatttgtgtaggaatcgaggttcgaaccccagattccccacttcttcacatataatgtgtgtgaatctagccactaaactgcttgaaaaaaa 12606775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 6922710 - 6922633
Alignment:
Q  16 ataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccacta 93  Q
    |||||||||| ||||||| || ||| ||||||||||||||||||| || ||| |||||||||||||||||||||||||    
T  6922710 ataatttgtgcaggggtcggggttcaaactccagattccccacttctccacatataatgtgtgtgaatctagccacta 6922633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 7326408 - 7326313
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||| | ||||||| || ||||||| | ||||||||||||| || ||||||||||||||||||| ||||||||| ||| ||| ||||||||    
T  7326408 gataatttgagcaggggtcgggtttcgaaccctagattccccacttctccacacataatgtgtgtgaatttagccactagactacttaacaaaaaa 7326313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 12654551 - 12654479
Alignment:
Q  38 ttcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||| |||||  ||||||||  |||||||||||||||||||||||||| |||||| ||||||||||||    
T  12654551 ttcgaactctagattttccactttttcacacataatgtgtgtgaatctagccaataaactacttgacaaaaaa 12654479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 5925646 - 5925707
Alignment:
Q  49 gattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    |||||||||||| |  |||||||||||||||||||||||||||||   | ||||||||||||    
T  5925646 gattccccacttcttcacacataatgtgtgtgaatctagccactaggttacttgacaaaaaa 5925707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 2994839 - 2994767
Alignment:
Q  38 ttcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    |||||||  |||||||||||||| || |||||||| | ||||||| ||||||||||| ||  |||||||||||    
T  2994839 ttcgaacctcagattccccacttatccacacataaagcgtgtgaaactagccactaagctatttgacaaaaaa 2994767  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 7339523 - 7339604
Alignment:
Q  11 cagagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccacta 93  Q
    |||| ||||||| || ||||||||| ||| |||| ||| ||||  ||||| |  |||||||||||||||||||||||||||||    
T  7339523 cagaaataatttctgcaggggtcagaatttgaacccca-attcttcacttcttcacacataatgtgtgtgaatctagccacta 7339604  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 21023742 - 21023693
Alignment:
Q  36 gattcgaactccagattccccacttttctacacataatgtgtgtgaatct 85  Q
    ||||||||| || ||||| |||||| || |||||||||||||||||||||    
T  21023742 gattcgaaccccggattctccacttctccacacataatgtgtgtgaatct 21023693  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 24896912 - 24896867
Alignment:
Q  49 gattccccacttttctacacataatgtgtgtgaatctagccactaa 94  Q
    ||||||||||||  | ||||||||||||||||||| ||||||||||    
T  24896912 gattccccacttcaccacacataatgtgtgtgaatttagccactaa 24896867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 20716448 - 20716412
Alignment:
Q  24 tgtaggggtcaggattcgaactccagattccccactt 60  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  20716448 tgtaggggtcgggattcgaactccagataccccactt 20716412  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 27227345 - 27227246
Alignment:
Q  11 cagagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    |||||||||||||| |||||||   | ||||||  ||||||||||||||| || ||||||||||||| ||||||||||||||| ||| ||||||| ||||    
T  27227345 cagagataatttgtataggggttgtgtttcgaatcccagattccccacttctccacacataatgtgtttgaatctagccactagactacttgacataaaa 27227246  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 23982046 - 23982141
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||||| || ||| ||  |||||||||| ||||| ||| || ||| |||||||||||||||||||||||||||| | | ||||||||||||    
T  23982046 gataatttgtgcagaggttagagttcgaactccggattctccatttctctgcacataatgtgtgtgaatctagccactagattacttgacaaaaaa 23982141  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 37307687 - 37307768
Alignment:
Q  12 agagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccacta 93  Q
    ||||||| | ||||| |||||| || |||||||||| |||||||||||| || ||| ||||||||| |||||||||||||||    
T  37307687 agagatattatgtgtcggggtcggggttcgaactccggattccccacttctccacaaataatgtgtttgaatctagccacta 37307768  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 9667312 - 9667217
Alignment:
Q  11 cagagataatttgtgtaggggtcagga-ttcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaa 106  Q
    ||||||||||||||||||||| | ||| ||||||| ||| ||| ||||||| || | |||||||||||||||||| |||||||| ||| ||||||||    
T  9667312 cagagataatttgtgtagggg-ctggagttcgaaccccaaatttcccacttctccatacataatgtgtgtgaatccagccactagactacttgacaa 9667217  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 25091192 - 25091286
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||||| |||||||  | ||| |||||||||||  | |||| |  ||||||||||||||||||||||||||||| ||| ||||||||||||    
T  25091192 gataatttgtgcaggggtcgaggttcaaactccagattttc-acttcttcacacataatgtgtgtgaatctagccactagactacttgacaaaaaa 25091286  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 27744606 - 27744704
Alignment:
Q  11 cagagataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||||||||| |||| | ||  |||||||  | |||||||||||| || ||||||||||||||||||| || ||||||||||  |||||||||||    
T  27744606 cagagataatttgtgcagggtt-agagttcgaacatcggattccccacttctccacacataatgtgtgtgaatttaaccactaaactatttgacaaaaaa 27744704  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 45725203 - 45725105
Alignment:
Q  12 agagataatttgtgtaggggtcaggattcgaa-ctccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    |||||||||||||| ||||||| ||||||||| ||| | ||| | ||||| |||||||||||||| ||| |||||||||||||  || ||||||||||||    
T  45725203 agagataatttgtgcaggggtcgggattcgaatctcga-attactcacttctctacacataatgtatgtaaatctagccactaggctacttgacaaaaaa 45725105  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 32958521 - 32958615
Alignment:
Q  16 ataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    |||||||||| ||| |||||  ||||||| || ||||| |||||| || |||| ||||||||||||||||||||| || ||| ||||| ||||||    
T  32958521 ataatttgtgcaggagtcagagttcgaaccccggattctccacttatccacacttaatgtgtgtgaatctagccattacactacttgataaaaaa 32958615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 47684564 - 47684462
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaataat 114  Q
    ||||||||||| ||||||  || || |||| || |||| || |||| || | |||||||||||||||||||||||| || ||| |||||||||||| |||    
T  47684564 gataatttgtgcaggggttggggtttgaaccccggatttcctacttctccatacataatgtgtgtgaatctagccaatagactacttgacaaaaaaaaat 47684465  T
Q  115 aat 117  Q
    |||    
T  47684464 aat 47684462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 23198601 - 23198524
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccacta 93  Q
    ||||||||||| ||||||  || ||| ||| || |||||||||||| || ||||||||||||||| |||||||||||||    
T  23198601 gataatttgtgcaggggttggggttcaaacccc-gattccccacttctccacacataatgtgtgtaaatctagccacta 23198524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 7683459 - 7683504
Alignment:
Q  65 acacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||||    
T  7683459 acacataatgtgtgtgaatctaaccactaaactacttaacaaaaaa 7683504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 24250189 - 24250145
Alignment:
Q  49 gattccccacttttctacacataatgtgtgtgaatctagccacta 93  Q
    ||||| ||||||||| ||||||||||||||||||||||| |||||    
T  24250189 gattctccacttttccacacataatgtgtgtgaatctagtcacta 24250145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 45967424 - 45967360
Alignment:
Q  29 gggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccacta 93  Q
    ||||| || ||||||| ||  ||||| |||||||  |||||||||||||||||||||||||||||    
T  45967424 gggtcggggttcgaaccccgaattcctcactttttcacacataatgtgtgtgaatctagccacta 45967360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 40097943 - 40097889
Alignment:
Q  65 acacataatgtgtgtgaatctagccactaaactgcttgac--aaaaaataataat 117  Q
    ||||||||||||||||||| ||| ||||||||| ||||||  |||||||||||||    
T  40097943 acacataatgtgtgtgaatttagacactaaactacttgacgaaaaaaataataat 40097889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 41780491 - 41780585
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    |||||||||||  ||||||||| |||||||   | ||||| ||||| |  |||||||||||||||||||||| ||||||  || ||||||||||||    
T  41780491 gataatttgtgccggggtcagggttcgaacaaga-attcctcacttctacacacataatgtgtgtgaatctaaccactaggctacttgacaaaaaa 41780585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 13054649 - 13054699
Alignment:
Q  38 ttcgaactccagattccccacttttctacacataatgtgtgtgaatctagc 88  Q
    ||||||| ||||||| ||||||| || |||||||||||||| |||||||||    
T  13054649 ttcgaaccccagatttcccacttctccacacataatgtgtgcgaatctagc 13054699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 44165925 - 44165873
Alignment:
Q  53 ccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaa 106  Q
    |||||||| || ||||||||||||||||||||| |||||||| || ||||||||    
T  44165925 ccccacttctccacacataatgtgtgtgaatct-gccactaacctacttgacaa 44165873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 7298 - 7203
Alignment:
Q  15 gataatttgtgtaggggtcaggattcgaactccagattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    ||||||||||||||||||||||  ||||||  |  |||| |||||| |||| ||||||| ||||| ||| |||||| |||| | ||||||||||||    
T  7298 gataatttgtgtaggggtcagggatcgaacatcgaattctccacttctctatacataatatgtgtaaatttagccaataaattacttgacaaaaaa 7203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 9746 - 9703
Alignment:
Q  49 gattccccacttttctacacataatgtgtgtgaatctagccact 92  Q
    |||||||||||| || ||||||||||||||||||||||||||||    
T  9746 gattccccacttctccacacataatgtgtgtgaatctagccact 9703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 8757317 - 8757256
Alignment:
Q  49 gattccccacttttctacacataatgtgtgtgaatctagccactaaactgcttgacaaaaaa 110  Q
    |||||||||| | || |||||||||||||||||||||| ||||||  || ||||||||||||    
T  8757317 gattccccacgtctccacacataatgtgtgtgaatctaaccactaggctacttgacaaaaaa 8757256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 1927618 - 1927672
Alignment:
Q  65 acacataatgtgtgtgaatctagccactaaactgcttgac--aaaaaataataat 117  Q
    ||||||||||||||||||||||| ||| ||||| ||||||  |||||||||||||    
T  1927618 acacataatgtgtgtgaatctagtcaccaaactacttgacgaaaaaaataataat 1927672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 2098801 - 2098854
Alignment:
Q  40 cgaactccagattccccacttttctacacataatgtgtgtgaatctagccacta 93  Q
    ||||| || ||||| |||||| || ||| |||||||||||||||||||||||||    
T  2098801 cgaaccccggattctccacttctccacatataatgtgtgtgaatctagccacta 2098854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 2661676 - 2661631
Alignment:
Q  49 gattccccacttttctacacataatgtgtgtgaatctagccactaa 94  Q
    |||||| ||||| || ||||||||| ||||||||||||||||||||    
T  2661676 gattcctcacttctccacacataatatgtgtgaatctagccactaa 2661631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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