View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_high_29 (Length: 277)
Name: NF1422_high_29
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 17782159 - 17782407
Alignment:
| Q |
19 |
tctcaacctgtttgacttcaagacttcccaaactaccaaaacatnnnnnnnccacagaagcaagaggctgcaaatcgagccactgcattatataattata |
118 |
Q |
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| T |
17782159 |
tctcaacctgtttgacttcaagacttcccaaactaccaaaacataaaaaaaccacagaagcaagaggctgcaaatcgagccactccattatataattata |
17782258 |
T |
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| Q |
119 |
ttggactgggtttggatcccattcagccggtccaacaagatcaataaccggcccaattgtgtaaaccggtggaagttgtgaatcatcataaagtgattga |
218 |
Q |
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| T |
17782259 |
ttggactgggtttggatcccattcagccggtccaacaagatcaataaccggcccaattgtgtaaaccggtggaagctgcgaatcatcataaagtgattga |
17782358 |
T |
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| Q |
219 |
agagcgtagggttcaagctcttgtaacgtatttaccacgataccctttg |
267 |
Q |
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| T |
17782359 |
agagcgtagggttcaagctcttgtaacgtatttaccacgataccctttg |
17782407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 20563342 - 20563589
Alignment:
| Q |
20 |
ctcaacctgtttgacttcaagacttcccaaactaccaaaacatnnnnnnnccacagaagcaagaggctgcaaatcgagccactgcattatataattatat |
119 |
Q |
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| T |
20563342 |
ctcaacctgttttgcttcaagacttcccaaacttccgaaacatagaaaaaccacagatttaacaggctgcaaatcaagccactccacgatgtaattatac |
20563441 |
T |
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| Q |
120 |
tggactgggtttggatcccattcagccggtccaacaagatcaataaccggcccaattgtgtaaaccggtggaagttgtgaatcatcataaagtgattgaa |
219 |
Q |
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| T |
20563442 |
tgtaccgggtttggatcccattggaccggtccaacaagatcaagaaccggtccaattgggtaaacaggtggaagctgcaaatcattgtgaagtgattcaa |
20563541 |
T |
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| Q |
220 |
gagcgtagggttcaagctcttgtaacgtatttaccacgataccctttg |
267 |
Q |
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| T |
20563542 |
gagcgtatggttcaagctcttttaatgtatttacgataataccctttg |
20563589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 267
Target Start/End: Original strand, 20582571 - 20582752
Alignment:
| Q |
86 |
ctgcaaatcgagccactgcattatataattatattggactgggtttggatcccattcagccggtccaacaagatcaataaccggcccaattgtgtaaacc |
185 |
Q |
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| T |
20582571 |
ctgcaaatctaaccactccatgatataattatactggactgggtttgggtcccattggaccggtccaacaaggtcgagaaccggtccaattgggtaaaca |
20582670 |
T |
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| Q |
186 |
ggtggaagttgtgaatcatcataaagtgattgaagagcgtagggttcaagctcttgtaacgtatttaccacgataccctttg |
267 |
Q |
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| T |
20582671 |
ggtggaagctgcaaatccttgtaaagtgattgtagagcataaggttcaagctcttgtaatgtatttaccacaataccctttg |
20582752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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