View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_high_32 (Length: 261)
Name: NF1422_high_32
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_high_32 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 5 - 246
Target Start/End: Complemental strand, 1112454 - 1112214
Alignment:
| Q |
5 |
ttctcttcgctaagcggttaatgatttgaattgcgtatagagaaatttagttgaggagagaaaatccttagcttcacaatcctctatcactgtcccaccc |
104 |
Q |
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| T |
1112454 |
ttctcttcgttaagcggttaagggtttgatttacatatagagaaatttagttgaggagggaaaatccttagcttcacaatcctctatccttgtcccacca |
1112355 |
T |
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| Q |
105 |
gccccctcccgtattttattgaatgaatcttacacgagtcttccattttaaaaaaggagaatgttaaaccgtgccctcaaacattggttaaacaattaaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || | ||| ||||||| |||||| ||| |
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| T |
1112354 |
accccctcccgtattttattgaatgaatcttacacgagtctcccattttaaaaaaggagaatgttaaaccgtacctttaaatattggtt-aacaatcaaa |
1112256 |
T |
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| Q |
205 |
acaattaactttttataaaaagtaaaaagttgtgtaattatt |
246 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||| |
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| T |
1112255 |
acaagtaactttttataaaaagtaaaatgttgtgtaattatt |
1112214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 37461884 - 37461840
Alignment:
| Q |
183 |
aaacattggttaaacaattaaaacaattaactttttataaaaagt |
227 |
Q |
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| T |
37461884 |
aaacattggttaagcaattaaaataagtaactttttataaaaagt |
37461840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 37992824 - 37992896
Alignment:
| Q |
158 |
aaggagaatgttaaaccgtgccctcaa-acattggttaaacaattaaaacaattaactttttataaaaagtaa |
229 |
Q |
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| T |
37992824 |
aaggagaatgctaaacggtgccctcatgacatcagttaaacaatcaaaacaagtaactttttattaaaagtaa |
37992896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 35808649 - 35808580
Alignment:
| Q |
159 |
aggagaatgttaaaccgtgccctcaaa-cattggttaaacaattaaaacaattaactttttataaaaagt |
227 |
Q |
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| T |
35808649 |
aggagaatgttaaacagtgtcctcaagtcattggttaagcaaccaaaataagtaactttttataaaaagt |
35808580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 55090779 - 55090819
Alignment:
| Q |
187 |
attggttaaacaattaaaacaattaactttttataaaaagt |
227 |
Q |
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| T |
55090779 |
attggttaagcaactaaaacaagtaactttttataaaaagt |
55090819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 83024 - 82962
Alignment:
| Q |
158 |
aaggagaatgttaaaccgtgccctca-aacattggttaaacaattaaaacaattaactttttat |
220 |
Q |
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| T |
83024 |
aaggagaatgttaaacagtgccctcaggacattggtt-aacaatcaaaacaagtaactttttat |
82962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 34382750 - 34382707
Alignment:
| Q |
184 |
aacattggttaaacaattaaaacaattaactttttataaaaagt |
227 |
Q |
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| T |
34382750 |
aacattggtttaacaatcaaaacaagtaactttttataaaaagt |
34382707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 19202449 - 19202407
Alignment:
| Q |
186 |
cattggttaaacaattaaaacaattaactttttataaaaagta |
228 |
Q |
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| T |
19202449 |
cattggttaagcaactaaaacaattaactttttattaaaagta |
19202407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 45408813 - 45408744
Alignment:
| Q |
157 |
aaaggagaatgttaaaccgtgccctcaaacattggttaaacaattaaaacaattaac-tttttataaaaa |
225 |
Q |
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| T |
45408813 |
aaaggagaatgttaaacactgtcatcagacattggttaaacaacaaaaacaagtaacatttttataaaaa |
45408744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 34228372 - 34228332
Alignment:
| Q |
187 |
attggttaaacaattaaaacaattaactttttataaaaagt |
227 |
Q |
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| T |
34228372 |
attggttaagcaattaaaacgagtaactttttataaaaagt |
34228332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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