View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1422_high_33 (Length: 261)

Name: NF1422_high_33
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1422_high_33
NF1422_high_33
[»] chr8 (3 HSPs)
chr8 (12-59)||(25357218-25357265)
chr8 (60-112)||(7094444-7094496)
chr8 (60-112)||(7098177-7098229)
[»] chr3 (1 HSPs)
chr3 (60-112)||(8377305-8377357)
[»] chr1 (4 HSPs)
chr1 (60-112)||(22362532-22362584)
chr1 (60-112)||(33885917-33885970)
chr1 (60-112)||(33958282-33958335)
chr1 (63-112)||(41314548-41314597)
[»] chr7 (4 HSPs)
chr7 (44-113)||(1609114-1609183)
chr7 (44-112)||(2186864-2186932)
chr7 (58-113)||(21270163-21270216)
chr7 (44-110)||(19633211-19633277)
[»] chr5 (2 HSPs)
chr5 (44-112)||(37627683-37627751)
chr5 (44-112)||(37806806-37806874)
[»] chr4 (1 HSPs)
chr4 (68-113)||(11993129-11993173)


Alignment Details
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 25357218 - 25357265
Alignment:
Q  12 agagaacaaaagcaacgtgtttaaaaagatcagtgtaacctcctattt 59  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25357218 agagaacaaaagcaacgtgtttaaaaagatcggtgtaacctcctattt 25357265  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 7094496 - 7094444
Alignment:
Q  60 cttaagtatagtgccactcatttaggaaggaagttagtgggaaggttatttca 112  Q
    |||||| |||||||||||| |||||||||| ||||||||||| ||||||||||    
T  7094496 cttaagcatagtgccactcttttaggaagggagttagtgggagggttatttca 7094444  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 7098229 - 7098177
Alignment:
Q  60 cttaagtatagtgccactcatttaggaaggaagttagtgggaaggttatttca 112  Q
    |||||| |||||||||||| |||||||||| ||||||||||| ||||||||||    
T  7098229 cttaagcatagtgccactcttttaggaagggagttagtgggagggttatttca 7098177  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 8377305 - 8377357
Alignment:
Q  60 cttaagtatagtgccactcatttaggaaggaagttagtgggaaggttatttca 112  Q
    |||||| |||||||||||| |||||||||| ||||||||||| ||||||||||    
T  8377305 cttaagcatagtgccactcttttaggaagggagttagtgggagggttatttca 8377357  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 22362532 - 22362584
Alignment:
Q  60 cttaagtatagtgccactcatttaggaaggaagttagtgggaaggttatttca 112  Q
    |||||| |||||||||||| |||||||||| ||||||||||| ||||||||||    
T  22362532 cttaagcatagtgccactcttttaggaagggagttagtgggagggttatttca 22362584  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 33885917 - 33885970
Alignment:
Q  60 cttaagtatagtgccactcattt-aggaaggaagttagtgggaaggttatttca 112  Q
    |||||| |||||||||||| ||| ||||||| ||||||||||| ||||||||||    
T  33885917 cttaagcatagtgccactctttttaggaagggagttagtgggagggttatttca 33885970  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 33958335 - 33958282
Alignment:
Q  60 cttaagtatagtgccactcattt-aggaaggaagttagtgggaaggttatttca 112  Q
    |||||| |||||||||||| ||| ||||||| ||||||||||| ||||||||||    
T  33958335 cttaagcatagtgccactctttttaggaagggagttagtgggagggttatttca 33958282  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 41314597 - 41314548
Alignment:
Q  63 aagtatagtgccactcatttaggaaggaagttagtgggaaggttatttca 112  Q
    |||||||||||||||||| |||||||  |||||||||||  |||||||||    
T  41314597 aagtatagtgccactcatctaggaagagagttagtgggagagttatttca 41314548  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 1609183 - 1609114
Alignment:
Q  44 gtgtaacctcctatttcttaagtatagtgccactcatttaggaaggaagttagtgggaaggttatttcat 113  Q
    ||||||||| | ||| || |||||||||||||||||| |||||||  |||||||||||  ||||||||||    
T  1609183 gtgtaacctaccattcctcaagtatagtgccactcatctaggaagagagttagtgggatagttatttcat 1609114  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 2186864 - 2186932
Alignment:
Q  44 gtgtaacctcctatttcttaagtatagtgccactcatttaggaaggaagttagtgggaaggttatttca 112  Q
    ||||||||| | ||| || |||||||||||||||||| |||||||  |||||||||||  |||||||||    
T  2186864 gtgtaacctaccattcctcaagtatagtgccactcatctaggaagagagttagtgggagagttatttca 2186932  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 21270216 - 21270163
Alignment:
Q  58 ttcttaagtatagtgccactcatttaggaaggaagttagtgggaaggttatttcat 113  Q
    |||||||| |||||||||||||||||||||||  ||||||||| ||||||||||||    
T  21270216 ttcttaagcatagtgccactcatttaggaagg-ggttagtggg-aggttatttcat 21270163  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 19633277 - 19633211
Alignment:
Q  44 gtgtaacctcctatttcttaagtatagtgccactcatttaggaaggaagttagtgggaaggttattt 110  Q
    ||||||||| | ||| || |||||||||||||||||| |||||||  |||||||||||  |||||||    
T  19633277 gtgtaacctaccattcctcaagtatagtgccactcatctaggaagagagttagtgggagagttattt 19633211  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 37627751 - 37627683
Alignment:
Q  44 gtgtaacctcctatttcttaagtatagtgccactcatttaggaaggaagttagtgggaaggttatttca 112  Q
    ||||||||| | ||| || |||||||||||||||||| |||||||  |||||||||||  |||||||||    
T  37627751 gtgtaacctaccattcctcaagtatagtgccactcatctaggaagagagttagtgggagagttatttca 37627683  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 37806874 - 37806806
Alignment:
Q  44 gtgtaacctcctatttcttaagtatagtgccactcatttaggaaggaagttagtgggaaggttatttca 112  Q
    ||||||||| | ||| || |||||||||||||||||| |||||||  |||||||||||  |||||||||    
T  37806874 gtgtaacctaccattcctcaagtatagtgccactcatctaggaagagagttagtgggagagttatttca 37806806  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 11993173 - 11993129
Alignment:
Q  68 tagtgccactcatttaggaaggaagttagtgggaaggttatttcat 113  Q
    ||||||||||| |||||||||| |||||||||| ||||||||||||    
T  11993173 tagtgccactcttttaggaagggagttagtggg-aggttatttcat 11993129  T

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