View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_high_34 (Length: 260)
Name: NF1422_high_34
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_high_34 |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 5985445 - 5985701
Alignment:
| Q |
1 |
ttttggaatagagtgagtagataattgctagcaagggtggcgaataagtacgtgatgaatgtttgaaaattgttcgtattaagatttgtataattgctag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5985445 |
ttttggaatagagtgagtagataattgctagcaagggtggcgaataagtacgtgatgaatgtttgaaaattgttcgtattaagatttgtataattgctag |
5985544 |
T |
|
| Q |
101 |
ggtatccttgaagacacaagataatgatattgattgacttatcattcatctcattcttctttgttggtgttatatgtgttgacataaacgactcgccctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5985545 |
ggtatccttgaagacacaagataatgatattgattgacttatcgttcatctcattcttctttgttggtgttatatgtgttgacataaacgactcgccctt |
5985644 |
T |
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| Q |
201 |
caaagcttcgacacacatttgtgggataagtattgccctcatatttaccttccataa |
257 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
5985645 |
caaagcttcgacacacatatgtgggattagtattgccctcatatttaccttccataa |
5985701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 28891254 - 28891190
Alignment:
| Q |
196 |
cccttcaaagcttcgacacacatttgtgggataagtattgccctcatatttaccttccataaccc |
260 |
Q |
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| T |
28891254 |
cccttcaatgcttcaacacacttttgttgaattagaattgccctcatctttaccttccacaaccc |
28891190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 25942159 - 25942095
Alignment:
| Q |
196 |
cccttcaaagcttcgacacacatttgtgggataagtattgccctcatatttaccttccataaccc |
260 |
Q |
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| T |
25942159 |
cccttcaatgcttcaacacacttttgttgaattagaattgccctcatctttaccttccacaaccc |
25942095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 47882579 - 47882643
Alignment:
| Q |
196 |
cccttcaaagcttcgacacacatttgtgggataagtattgccctcatatttaccttccataaccc |
260 |
Q |
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| T |
47882579 |
cccttcaatgcttcaacacacttttgttgaattagaattgccctcatctttaccttccacaaccc |
47882643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 20054451 - 20054515
Alignment:
| Q |
196 |
cccttcaaagcttcgacacacatttgtgggataagtattgccctcatatttaccttccataaccc |
260 |
Q |
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|||||||| ||||| |||||| ||||| | || || ||||||||||| ||||||||||| ||||| |
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| T |
20054451 |
cccttcaatgcttcaacacacttttgttgaattagaattgccctcatctttaccttccacaaccc |
20054515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 2400915 - 2400979
Alignment:
| Q |
196 |
cccttcaaagcttcgacacacatttgtgggataagtattgccctcatatttaccttccataaccc |
260 |
Q |
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|||||||| ||||| |||||| ||||| | || || ||||||||||| ||||||||||| ||||| |
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| T |
2400915 |
cccttcaatgcttcaacacacttttgttgaattagaattgccctcatctttaccttccacaaccc |
2400979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 9522215 - 9522151
Alignment:
| Q |
196 |
cccttcaaagcttcgacacacatttgtgggataagtattgccctcatatttaccttccataaccc |
260 |
Q |
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|||||||| ||||| |||||| ||||| | || || ||||||||||| ||||||||||| ||||| |
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| T |
9522215 |
cccttcaatgcttcaacacacttttgttgaattagaattgccctcatctttaccttccacaaccc |
9522151 |
T |
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