View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_high_35 (Length: 252)
Name: NF1422_high_35
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 11609566 - 11609808
Alignment:
| Q |
4 |
tatcatcttttgctatgtaaattgtttaggtcttttggtattcannnnnnn--ctttctatgtggagcagcctctagttacacctcccaaagatggtgtg |
101 |
Q |
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| T |
11609566 |
tatcatcttttgctgtgtaaattgtttaggtcttttggtattcatttttttttctttctatgtggagcagcctctagtttcacctcccaaagatggtgtg |
11609665 |
T |
|
| Q |
102 |
aagattattcaagaatgtttcatagaccctttgggatcctatgttgtttattctcctgtaaacacacaagagttgaatatggcaataaatggccatgatt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11609666 |
aagattattcaagaatgtttcatagaccctttgggatcctatgttgtttattctcctctaaacacacaagagttgaatatggcaataaatggccatgatt |
11609765 |
T |
|
| Q |
202 |
tatcaaatgtgtcacttataattccatcaggctttttcatctc |
244 |
Q |
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| T |
11609766 |
tatcaaatgtgtcacttataattccatcaggctttctcatctc |
11609808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 11586481 - 11586723
Alignment:
| Q |
4 |
tatcatcttttgctatgtaaattgtttaggtcttttggtattcannnnnnn--ctttctatgtggagcagcctctagttacacctcccaaagatggtgtg |
101 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11586481 |
tatcatcttttgatgtgtaaattgtttaggtcttttggtattcatttttttttctttctatgtggagcagcctctagtttcacctcccaaagatggtgtg |
11586580 |
T |
|
| Q |
102 |
aagattattcaagaatgtttcatagaccctttgggatcctatgttgtttattctcctgtaaacacacaagagttgaatatggcaataaatggccatgatt |
201 |
Q |
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| T |
11586581 |
aagattattcaagaatgtttcatagaccctttgggatcctatgttgtttattctcctctaaacacacaagagttgaatatggcaataaatggccatgatt |
11586680 |
T |
|
| Q |
202 |
tatcaaatgtgtcacttataattccatcaggctttttcatctc |
244 |
Q |
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| T |
11586681 |
tatcaaatgtgtcacttataattccatcaggctttctcatctc |
11586723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 11599067 - 11599309
Alignment:
| Q |
4 |
tatcatcttttgctatgtaaattgtttaggtcttttggtattcannnnnnn--ctttctatgtggagcagcctctagttacacctcccaaagatggtgtg |
101 |
Q |
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|
|||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11599067 |
tatcatcttttgatgtgtaaattgtttaggtcttttggtattcatttttttttctttctatgtggagcagcctctagtttcacctcccaaagatggtgtg |
11599166 |
T |
|
| Q |
102 |
aagattattcaagaatgtttcatagaccctttgggatcctatgttgtttattctcctgtaaacacacaagagttgaatatggcaataaatggccatgatt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11599167 |
aagattattcaagaatgtttcatagaccctttgggatcctatgttgtttattctcctctaaacacacaagagttgaatatggcaataaatggccatgatt |
11599266 |
T |
|
| Q |
202 |
tatcaaatgtgtcacttataattccatcaggctttttcatctc |
244 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
11599267 |
tatcaaatgtgtcacttataattccatcaggctttctcatctc |
11599309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 13369051 - 13369001
Alignment:
| Q |
108 |
attcaagaatgtttcatagaccctttgggatcctatgttgtttattctcct |
158 |
Q |
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|||||||||| |||||||| |||||||||||||||||||| | ||||||| |
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| T |
13369051 |
attcaagaatacttcatagatcctttgggatcctatgttgtgttttctcct |
13369001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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