View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1422_high_38 (Length: 250)

Name: NF1422_high_38
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1422_high_38
NF1422_high_38
[»] chr1 (2 HSPs)
chr1 (13-250)||(648490-648727)
chr1 (76-250)||(685955-686125)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 648490 - 648727
Alignment:
Q  13 aatatggatataaaggagagatttatattgattgtactgcttaaagatagtaatagacgatgcaatctaaacatgaaaacatgaacattttctcaaaacc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  648490 aatatggatataaaggagagatttatattgattgtactgcttaaagatagtaatagacgatgcaatctaaacatgaaaacatgaacattttctcaaaacc 648589  T
Q  113 aacaacaagtcctaaaatttcaattatgctaaaacattatattacttttctaaattacacccagtatttaaacattgctagcttttgctctgaataaatg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  648590 aacaacaagtcctaaaatttcaattatgctaaaacattatattacttttctaaattacacccagtatttaaacattgctagcttttgttctgaataaatg 648689  T
Q  213 aagatttgtcttaaacacaccagacttttaaattttaa 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  648690 aagatttgtcttaaacacaccagacttttaaattttaa 648727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 250
Target Start/End: Original strand, 685955 - 686125
Alignment:
Q  76 aatctaaacatgaaaacatgaacattttctcaaaaccaacaacaagtcctaaaatttcaattatgctaaaacattatattacttttctaaattacaccca 175  Q
    |||| |||||| |||||||||||||||||||||  |||| ||||||||||||||||||| |||||||||||||| |||  |||||| |||||||||||||    
T  685955 aatccaaacataaaaacatgaacattttctcaa--ccaaaaacaagtcctaaaatttcagttatgctaaaacataatagaacttttataaattacaccca 686052  T
Q  176 gtatttaaacattgctagcttttgctctgaataaatgaagatttgtcttaaacacaccagacttttaaattttaa 250  Q
    || || |||||||||||||||||  ||| |||||||||| |||||| || |||| |  |||||||||||||||||    
T  686053 gttttcaaacattgctagctttttttcttaataaatgaatatttgt-ttgaacaga-tagacttttaaattttaa 686125  T

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