View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_high_39 (Length: 249)
Name: NF1422_high_39
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 22813103 - 22813326
Alignment:
| Q |
18 |
acctctagttgttcatgaagacgcctctgaacgtctagctgcagctgaagtgcctctctaatttgcaaaccactgcaaattacgaaaagaaatatagttt |
117 |
Q |
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| T |
22813103 |
acctctagttgttcatgaagacgcctctgaacgtctagctgcagctgaagtgcctctctaatttgcaaaccactgcaaattacgaaaagaaatatagttt |
22813202 |
T |
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| Q |
118 |
gttacaatatgaaaataagcaagaaatgattgcactggaattatagaacataacaatcggaaaaatatgtaagtagcattacgatttggcatcaaggttc |
217 |
Q |
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| T |
22813203 |
gttacaatatgaaaataagcaagaaatgattgcactggaattatagaacataacaatcggaaaaataagtaagtagcattacgatttcgcatcaaggttc |
22813302 |
T |
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| Q |
218 |
acattctctacatgagttcatttc |
241 |
Q |
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||||||||||||||||||| |||| |
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| T |
22813303 |
acattctctacatgagttcttttc |
22813326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 22810129 - 22810171
Alignment:
| Q |
188 |
aagtagcattacgatttggcatcaaggttcacattctctacat |
230 |
Q |
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| T |
22810129 |
aagtagcattacgatttggcatcaagatgcatattctctacat |
22810171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 40382614 - 40382841
Alignment:
| Q |
18 |
acctctagttgttcatgaagacgcctctgaacgtctagctgcagctgaagtgcctctctaatttgcaaaccactgcaaattacgaaaagaaatata--gt |
115 |
Q |
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| T |
40382614 |
acctcaagttgatcatgaagacgcctctgaacatctagctgcagctgaagtgcctctttaatctgcaaacccctgcaaattataaaaacaaatatagtgt |
40382713 |
T |
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| Q |
116 |
ttgttacaatatgaaaataagcaagaaatgattgcactgga--attatagaacataacaatcggaaaaatatgtaagtagcattacgatttggcatcaag |
213 |
Q |
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| T |
40382714 |
ttgttgcaatatgaaaataagcaagaaatgattgcactggaatattatagaacataacaatacgaaaaataagtaagtagcattacaatttggcatcaag |
40382813 |
T |
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| Q |
214 |
gttcacattctctacatgagttcatttc |
241 |
Q |
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| T |
40382814 |
attcacattctccacgtgagttcttttc |
40382841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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